Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30634.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08710.1 68418.m01035 regulator of chromosome condensation (R...    31   0.56 
At1g30930.1 68414.m03786 F-box family protein contains F-box dom...    31   0.97 
At5g60870.2 68418.m07635 regulator of chromosome condensation (R...    29   2.2  
At5g60870.1 68418.m07636 regulator of chromosome condensation (R...    29   2.2  
At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR...    29   3.0  
At1g19880.1 68414.m02493 regulator of chromosome condensation (R...    29   3.0  
At1g67720.1 68414.m07728 leucine-rich repeat family protein / pr...    28   6.8  
At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton sy...    28   6.8  
At1g33080.2 68414.m04081 MATE efflux family protein similar to r...    27   9.0  
At1g33080.1 68414.m04082 MATE efflux family protein similar to r...    27   9.0  

>At5g08710.1 68418.m01035 regulator of chromosome condensation
           (RCC1) family protein / UVB-resistance protein-related
           contains Pfam PF00415 : Regulator of chromosome
           condensation (RCC1); similar to UVB-resistance protein
           UVR8  (GI:10177674) {Arabidopsis thaliana}
          Length = 434

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +2

Query: 335 NFKLVWHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           N    W P   S      IT +ACG   T+     +E  +VF TG+N   Q+G
Sbjct: 66  NLDSQWTPAVCSALSDHSITAVACGGAHTLF---LTETRRVFATGLNDCGQLG 115


>At1g30930.1 68414.m03786 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 376

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
 Frame = -3

Query: 624 SRNYCVSTSRCHCXNLTLQALVR-------YINRCIAKQKFQRMISRGEWYPIWESVLIP 466
           SR+   S +RCHC +   +A+ R       ++ R  A+ +   ++  GEW   W  + +P
Sbjct: 15  SRSTAKSVARCHCVSKQWRAIFRRKYFIELFLTRSKARPRILFVVQDGEWSE-WSFLSLP 73

Query: 465 VPK 457
            P+
Sbjct: 74  QPQ 76


>At5g60870.2 68418.m07635 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 383

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +2

Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPR 508
           W PM     E   IT IACG G+   S+  +E+ KV   G     Q+G  S R
Sbjct: 234 WEPMPVPSLEGVRITQIACG-GY--HSLALTEEGKVLSWGHGGHGQLGSSSLR 283


>At5g60870.1 68418.m07636 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 445

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +2

Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPR 508
           W PM     E   IT IACG G+   S+  +E+ KV   G     Q+G  S R
Sbjct: 303 WEPMPVPSLEGVRITQIACG-GY--HSLALTEEGKVLSWGHGGHGQLGSSSLR 352


>At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 992

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 440  SEQHKVFGTGINTDSQIGYHSPREIILWNFCLAMHLFI 553
            SEQ   +  G ++D ++ +H  + +  W FC   H F+
Sbjct: 950  SEQVSEYEDGYHSDRRLEFHEQKSLPGWGFCGIFHGFL 987


>At1g19880.1 68414.m02493 regulator of chromosome condensation
           (RCC1) family protein low similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 538

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 386 DITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPRE 511
           ++TN+ACG  FTV  + ++E   +   G+    Q+G+ +  E
Sbjct: 168 EVTNVACGADFTV-WLSSTEGASILTAGLPQYGQLGHGTDNE 208


>At1g67720.1 68414.m07728 leucine-rich repeat family protein /
           protein kinase family protein contains similarity to
           light repressible receptor protein kinase [Arabidopsis
           thaliana] gi|1321686|emb|CAA66376; contains Pfam doamins
           PF00069: Protein kinase domain and PF00560: Leucine Rich
           Repeat
          Length = 929

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 285 WVSTSHVARKGXKVTKTTSNWFGIQ 359
           WVS S + ++G  VT   +NW  +Q
Sbjct: 46  WVSDSEIIKQGKPVTLANTNWNSMQ 70


>At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton
           symporter (SUC2) nearly identical to sucrose-proton
           symporter SUC2 [Arabidopsis thaliana] GI:407092
          Length = 512

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 615 YCVSTSRCHCXNLTLQALVRYINRCIAKQK 526
           YC +   C   ++TL  +V +++ C  K+K
Sbjct: 218 YCANLKTCFFLSITLLLIVTFVSLCYVKEK 247


>At1g33080.2 68414.m04081 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 490

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 361 HWMPNQFEVVFVTFXPFLATW 299
           HW+PN  +V+FVT      TW
Sbjct: 226 HWLPNIAQVLFVTCGGCTETW 246


>At1g33080.1 68414.m04082 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 494

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 361 HWMPNQFEVVFVTFXPFLATW 299
           HW+PN  +V+FVT      TW
Sbjct: 226 HWLPNIAQVLFVTCGGCTETW 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,505,300
Number of Sequences: 28952
Number of extensions: 325551
Number of successful extensions: 773
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)