Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30633.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    27   2.6  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   4.5  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   6.0  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    26   6.0  

>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 512  NNLMAIRTSTECQIITYSTVETLALEAPKNLSELR-IH 402
            +NLMAI  S      T S + ++A + P+N+ EL+ IH
Sbjct: 1130 SNLMAIDDSRVSSYFTDSVLLSMAKKLPRNVKELKEIH 1167


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
 Frame = -3

Query: 411 SNSYRLTSHVILFKSHPVLNEE----EKMLFIN*GNIVCRSLVELDW---SIILVNSMTS 253
           +N  R  S+ +LFK+H  +N E    E+  F   G +  RS   LDW    + L+++   
Sbjct: 664 ANRIRDLSYQLLFKNHESVNLELRDPEREFFFE-GIVQRRSDSRLDWLDIHLFLLDNYLI 722

Query: 252 LVKANSD 232
           + KA  D
Sbjct: 723 MAKARKD 729


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 341 FSSSFSTGWDLKSITCDVNRYEFEALISFLEPQGPMF 451
           +SSS S+   LK+   D+NR+E E  I+FL  +  +F
Sbjct: 36  YSSSASSDQLLKN---DINRHEMERRIAFLNRKQALF 69


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -2

Query: 649 KIENVIIERIECPKKSYSLFVHLQLTCQHKIVGISLFLMSPVDQEVII*WQFVLQLSVR 473
           KI + +  R+EC     +LF H +   Q K    S +L S  D + I  W F  + SVR
Sbjct: 79  KIWSALTFRLEC-----TLFGHYRGISQVKWATGSKYLASASDDKTIRIWDFEKRCSVR 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,005
Number of Sequences: 5004
Number of extensions: 58377
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)