Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30633.Seq
         (698 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058593-1|AAL13822.1|  767|Drosophila melanogaster LD28817p pro...    60   3e-09
AE014297-1398|AAF54712.1|  767|Drosophila melanogaster CG6962-PA...    60   3e-09

>AY058593-1|AAL13822.1|  767|Drosophila melanogaster LD28817p
           protein.
          Length = 767

 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
 Frame = +2

Query: 257 VIELTRIIDQSSSTKDLQTIFPQLINNIFSSSFST-GWDLKSITCDVNRYEFEALISFLE 433
           V EL+ + D+ S  + +Q IFP ++++IF    +  GW L++ T + N  +F+ L  F  
Sbjct: 26  VHELSILFDRCS-LRQVQEIFPHVVHSIFGIDGNPLGWGLRTTTLENNPVQFQTLHQFFG 84

Query: 434 PQGPMFRLCYRLLSDTQLKYELPLNYYLLIYR*H*KEGDAHNF---MLTC*LQMHKQ*I* 604
             GP+  +C+RLL D Q K+EL +N     +    + G   +F   ++     MH+    
Sbjct: 85  VCGPLMHVCHRLLVD-QYKFELDINLLPAKFVSLLQNGQNPSFYAELINVETMMHQV--- 140

Query: 605 FLWALNPFDYYIFNFGL 655
              +LN FD+Y+ +F L
Sbjct: 141 STLSLNAFDFYVIHFVL 157



 Score = 31.9 bits (69), Expect = 0.86
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 502 IKLLPLDLQVTLERGRCPQFYADMLTADA--QTMNMISLGTQSFRLLHF 642
           I LLP      L+ G+ P FYA+++  +     ++ +SL    F ++HF
Sbjct: 107 INLLPAKFVSLLQNGQNPSFYAELINVETMMHQVSTLSLNAFDFYVIHF 155


>AE014297-1398|AAF54712.1|  767|Drosophila melanogaster CG6962-PA
           protein.
          Length = 767

 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
 Frame = +2

Query: 257 VIELTRIIDQSSSTKDLQTIFPQLINNIFSSSFST-GWDLKSITCDVNRYEFEALISFLE 433
           V EL+ + D+ S  + +Q IFP ++++IF    +  GW L++ T + N  +F+ L  F  
Sbjct: 26  VHELSILFDRCS-LRQVQEIFPHVVHSIFGIDGNPLGWGLRTTTLENNPVQFQTLHQFFG 84

Query: 434 PQGPMFRLCYRLLSDTQLKYELPLNYYLLIYR*H*KEGDAHNF---MLTC*LQMHKQ*I* 604
             GP+  +C+RLL D Q K+EL +N     +    + G   +F   ++     MH+    
Sbjct: 85  VCGPLMHVCHRLLVD-QYKFELDINLLPAKFVSLLQNGQNPSFYAELINVETMMHQV--- 140

Query: 605 FLWALNPFDYYIFNFGL 655
              +LN FD+Y+ +F L
Sbjct: 141 STLSLNAFDFYVIHFVL 157



 Score = 31.9 bits (69), Expect = 0.86
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 502 IKLLPLDLQVTLERGRCPQFYADMLTADA--QTMNMISLGTQSFRLLHF 642
           I LLP      L+ G+ P FYA+++  +     ++ +SL    F ++HF
Sbjct: 107 INLLPAKFVSLLQNGQNPSFYAELINVETMMHQVSTLSLNAFDFYVIHF 155


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,158,215
Number of Sequences: 53049
Number of extensions: 550777
Number of successful extensions: 1195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)