Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30631.Seq
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                      112   9e-26
08_02_1181 - 24985963-24986242,24987109-24987197                      109   8e-25
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649     91   2e-19
01_03_0147 - 13125065-13126679,13126802-13127664                       28   3.3  
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    27   5.7  
03_02_0178 + 6195402-6199158,6199438-6200003                           27   7.6  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  112 bits (270), Expect = 9e-26
 Identities = 50/74 (67%), Positives = 61/74 (82%)
 Frame = +3

Query: 36  KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTR 215
           K +R G +  +EVVTREYT+NLHKRLHG  FKK+AP AIKEIRKFA+K MGT D+RVD +
Sbjct: 4   KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVK 63

Query: 216 LNKFLWSKGVRNVP 257
           LNK +WS G+R+VP
Sbjct: 64  LNKHIWSSGIRSVP 77


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  109 bits (262), Expect = 8e-25
 Identities = 50/73 (68%), Positives = 60/73 (82%), Gaps = 1/73 (1%)
 Frame = +3

Query: 42  ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRL 218
           E+KG +A  E VVTREYT+NLHKRLH   FKK+AP AIKEIRKFA+K MGT D+RVD +L
Sbjct: 3   EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKL 62

Query: 219 NKFLWSKGVRNVP 257
           NK +WS G+R+VP
Sbjct: 63  NKHIWSSGIRSVP 75


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 46/80 (57%), Positives = 56/80 (70%), Gaps = 16/80 (20%)
 Frame = +3

Query: 66  NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFAEKQMGTPD 197
           +EVVTREYT+NLHKRLHG                  FKK+AP AIKEIRKFA+K MGT D
Sbjct: 13  DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTD 72

Query: 198 IRVDTRLNKFLWSKGVRNVP 257
           IR+D +LNK +W+ G+R+VP
Sbjct: 73  IRIDVKLNKAIWTNGIRSVP 92


>01_03_0147 - 13125065-13126679,13126802-13127664
          Length = 825

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 265 DTEGTFLTPLDQRNLFKRVSTRMSGVPICFS 173
           +T  ++LT L  RNL + +  R +G P C++
Sbjct: 477 ETARSYLTDLISRNLIQALHLRHNGTPSCYT 507


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 93  VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 197
           +N+   ++G GF   A   + E+ K A KQ+  PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 6   TKLKITMAKPKGERKGKSAINEVVTREYTVNL 101
           T L + M KP  E KGK    +V+++E  + +
Sbjct: 704 TALNLIMGKPSAEDKGKGIAFDVLSKEEDIGV 735


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,683,138
Number of Sequences: 37544
Number of extensions: 162831
Number of successful extensions: 366
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)