Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30628.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)             119   1e-27
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                31   0.53 
SB_27203| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   4.9  

>SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score =  119 bits (287), Expect = 1e-27
 Identities = 51/57 (89%), Positives = 55/57 (96%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGDTHSSRFIPLK 427
           M+GS+VG+YNGKTF QVEIKPEMIGHYLGEFS+TYKPVKHGRPGIG THSSRFIPLK
Sbjct: 93  MIGSVVGVYNGKTFTQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 149



 Score =  117 bits (282), Expect = 5e-27
 Identities = 56/82 (68%), Positives = 66/82 (80%)
 Frame = +3

Query: 9   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 188
           +K+KR FRKFTYRGVDLDQLLD+ +EQLMEL+          GLKRKP+AL+K+LR+AKK
Sbjct: 10  IKRKRTFRKFTYRGVDLDQLLDLSHEQLMELVCCRQRRRFTRGLKRKPLALMKRLRKAKK 69

Query: 189 EAPPNEKPEIVKTHLXXMIIVP 254
           EA P EKPE+VKTHL  MIIVP
Sbjct: 70  EAAPMEKPEVVKTHLRNMIIVP 91


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 275 GIYNGKTFNQVE-IK-PEMIGHYLGEFSVTYKPVKHGRPGIGDTHSSRFIPL 424
           GIY    ++ VE +K P +IG+  G F+     ++ G  G GDTH    +PL
Sbjct: 155 GIYLPLNWDPVECVKTPLLIGYAQGHFTALVS-IEDGNAGAGDTHKIHGVPL 205


>SB_27203| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 527

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +1

Query: 1   TKPSRKSVFSGSSLTGELISISSLICPMSNSWN*CMXVRAGGSLVVLNV 147
           TKP   S  SGS+  G L   SS  C  S+S +  + V  GG + V  V
Sbjct: 179 TKPDAMSASSGSASAGRLYGNSSW-CSTSSSVSEYLQVDLGGVMTVSGV 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,174,470
Number of Sequences: 59808
Number of extensions: 228119
Number of successful extensions: 407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)