Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30626.Seq
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   120   2e-28
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   120   2e-28
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    31   0.16 
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    28   1.2  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   8.2  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   8.2  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  120 bits (289), Expect = 2e-28
 Identities = 55/73 (75%), Positives = 64/73 (87%)
 Frame = +2

Query: 251 GCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 430
           G GHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFG
Sbjct: 68  GGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFG 127

Query: 431 GPGARARYQKSYR 469
           G GARAR QKSYR
Sbjct: 128 GHGARARQQKSYR 140



 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 38/68 (55%), Positives = 52/68 (76%)
 Frame = +3

Query: 51  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 230
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 231 XIRVTVKG 254
            IRV V G
Sbjct: 61  DIRVRVSG 68


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  120 bits (289), Expect = 2e-28
 Identities = 55/73 (75%), Positives = 64/73 (87%)
 Frame = +2

Query: 251 GCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 430
           G GHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFG
Sbjct: 68  GGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFG 127

Query: 431 GPGARARYQKSYR 469
           G GARAR QKSYR
Sbjct: 128 GHGARARQQKSYR 140



 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 38/68 (55%), Positives = 52/68 (76%)
 Frame = +3

Query: 51  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 230
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 231 XIRVTVKG 254
            IRV V G
Sbjct: 61  DIRVRVSG 68


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 28/87 (32%), Positives = 39/87 (44%)
 Frame = +2

Query: 194 YPFARQGKILYG*XQSDSQGCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 373
           YP A   ++      +   G G   Q  A+  AISK+LI      + E S K+     V 
Sbjct: 52  YPLAACNRLTNYNVWATVHGGGPTGQSGAVHAAISKSLI------LQEPSLKQ-----VI 100

Query: 374 YDRSLLVADPRRCEPKKFGGPGARARY 454
            D   ++ D R+ E KK G P AR +Y
Sbjct: 101 KDTHCVLNDKRKVERKKTGQPKARKKY 127



 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 72  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYK 182
           G++K++ A      G G   VNG P D+   R++  K
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK 48


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/58 (31%), Positives = 23/58 (39%)
 Frame = +1

Query: 154 WLSPDCCSTNFRNLSFCSARKNSLWLXSE*QSRVWSCSTSLRYQTSYFKGSDRLLPEI 327
           W S D  S N    S  S  K S W   E +  + S    +    S  K  +RLLP +
Sbjct: 342 WSSSDMASLNDSLYSHPSVSKQSTWTEEELKEELESFGELVPVPFSSTKAFERLLPHL 399


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 3   SGSPGLQAVQEARREPIQAVQVFGRKKTA 89
           SGS  L AV+E RR+P ++ + + ++ T+
Sbjct: 376 SGSETLYAVKEFRRKPAESQKKYTKRLTS 404


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 138  RLHAAFHDHACNTQLRWRFS 79
            RLH+ F++H C + L+  FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,194
Number of Sequences: 5004
Number of extensions: 48389
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)