Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30626.Seq
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 130 8e-31
11_01_0155 - 1287003-1287452 130 8e-31
07_03_0227 - 15398371-15398925 30 1.2
06_03_0975 - 26471438-26472109,26472189-26472284,26472372-264724... 30 1.2
07_03_0631 + 20104332-20106802,20106904-20107030,20107352-201074... 29 2.7
11_06_0598 - 25391923-25393197 28 6.3
09_06_0089 + 20781086-20782985,20783463-20783538,20783593-207836... 28 6.3
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 28 6.3
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 6.3
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 27 8.4
04_04_0028 - 22243272-22243577,22244564-22244713,22244919-222456... 27 8.4
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 27 8.4
>12_01_0152 - 1168928-1169377
Length = 149
Score = 130 bits (314), Expect = 8e-31
Identities = 58/74 (78%), Positives = 68/74 (91%)
Frame = +2
Query: 248 QGCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 427
+G G +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 428 GGPGARARYQKSYR 469
GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149
Score = 84.2 bits (199), Expect = 7e-17
Identities = 36/71 (50%), Positives = 51/71 (71%)
Frame = +3
Query: 42 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 221
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 222 SMVXIRVTVKG 254
+ +R+ V+G
Sbjct: 67 KDIDMRIRVRG 77
>11_01_0155 - 1287003-1287452
Length = 149
Score = 130 bits (314), Expect = 8e-31
Identities = 58/74 (78%), Positives = 68/74 (91%)
Frame = +2
Query: 248 QGCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 427
+G G +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 428 GGPGARARYQKSYR 469
GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149
Score = 84.2 bits (199), Expect = 7e-17
Identities = 36/71 (50%), Positives = 51/71 (71%)
Frame = +3
Query: 42 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 221
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 222 SMVXIRVTVKG 254
+ +R+ V+G
Sbjct: 67 KDIDMRIRVRG 77
>07_03_0227 - 15398371-15398925
Length = 184
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -3
Query: 192 VPEVCTAAVWAQPSPMGARLHAAFH--DHACNTQLRWRF 82
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>06_03_0975 -
26471438-26472109,26472189-26472284,26472372-26472482,
26472494-26472530,26472566-26472576,26472674-26473050,
26474310-26474895
Length = 629
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = -3
Query: 162 AQPSPMGARLHAAFHDHACNTQLRWRFSYVRILGRPGWAHVLPPAQPAARGI 7
A P P + A HDHA R S +R GR A +P A P+ARG+
Sbjct: 12 AAPPPSTSAAADAAHDHAGALAPHRRASPLRRRGRLFLACRVPAAAPSARGV 63
>07_03_0631 +
20104332-20106802,20106904-20107030,20107352-20107479,
20108771-20109083
Length = 1012
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 193 LSFCSARKNSLWLXSE*QSRVWSCSTSLRYQTSYFKGSD-RLLPEICRRSL 342
L +CS +S +++W C++ ++Q S ++ +D R L E+ RSL
Sbjct: 409 LGYCSMFPSSYLFDKRKMTQMWVCNSMQQHQESAYEITDIRWLDELLNRSL 459
>11_06_0598 - 25391923-25393197
Length = 424
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -3
Query: 450 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 298
LA PP L S TS L + T + ++ S+TY AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304
>09_06_0089 +
20781086-20782985,20783463-20783538,20783593-20783669,
20784301-20784405,20784601-20784659
Length = 738
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -1
Query: 311 RSEPLK*LV**RKLVLHDHTLDCHSDXNHREFFLAEQKDRFLKFVLQQSGL 159
++EP+ L+ + VL+ LD +D LA DR+ K ++++ G+
Sbjct: 139 QNEPILFLIWEQIAVLYTGNLDARADAAASLVSLARDNDRYSKLIIEEDGV 189
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 34 RQDVSPSRPSKYSDVRKPPPQLRIAS 111
R+ S S P K SD R PPP+ R S
Sbjct: 33 RRSTSRSPPPKKSDSRSPPPRRRSTS 58
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 135 NGRPLDLVEPRLLQYKLQEPILLL 206
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 7 DPPGCRLCRRQ-DVSPSRPSKYSD 75
DPP C +C+R +S PSKY +
Sbjct: 116 DPPRCYICKRSGHISSGCPSKYKN 139
>04_04_0028 -
22243272-22243577,22244564-22244713,22244919-22245656,
22247233-22247331,22247541-22247933,22248806-22248961
Length = 613
Score = 27.5 bits (58), Expect = 8.4
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Frame = +1
Query: 19 CRLCRRQDVSPSRPSKYSDVRKPPPQLRIASVVMECCV*T--GAHWTWLSPDCCSTNFRN 192
C C + +S R D+R P +A +++ CCV T H T LS F
Sbjct: 394 CNCCCLEWLSMVRCHLKDDLRVDRPMSHLAYLLISCCVITKIELHATKLSTFIYEGEFVP 453
Query: 193 LSFCSARKNSLWLXSE*QSRVWSCSTSLR-YQTSYFKGSDRLL 318
+ K +LW S S +SC ++ + GSD++L
Sbjct: 454 IVLNHTSKLNLW--SLDNSLKFSCLKHIQLFAHILSHGSDKIL 494
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 146 WAPVYTQHSMTTLAIRNCGGGFLTSEYLD 60
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,865,591
Number of Sequences: 37544
Number of extensions: 400027
Number of successful extensions: 1154
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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