Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30626.Seq
         (587 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             132   2e-31
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        33   0.17 
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)                   32   0.30 
SB_36586| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_58307| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.9  
SB_3149| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_17747| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_15671| Best HMM Match : DUF765 (HMM E-Value=9.6)                    27   8.6  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  132 bits (320), Expect = 2e-31
 Identities = 60/74 (81%), Positives = 69/74 (93%)
 Frame = +2

Query: 248 QGCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 427
           +G GH +++YAIRQAISK+L+A+YQKYVDE SKKEI+DILVQYDRSLLVADPRR E KKF
Sbjct: 34  KGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKF 93

Query: 428 GGPGARARYQKSYR 469
           GGPGAR+RYQKSYR
Sbjct: 94  GGPGARSRYQKSYR 107



 Score = 39.1 bits (87), Expect(2) = 0.001
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = +3

Query: 180 KLQEPILLLGKEKFSMVXIRVTVKG 254
           K++EPILLLGKE+F  V IRV VKG
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKG 35



 Score = 20.6 bits (41), Expect(2) = 0.001
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 54 QAVQVFGRK 80
          Q+VQVFGRK
Sbjct: 3  QSVQVFGRK 11


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 305 LIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 415
           ++AF QKY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 53  VLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
          Length = 513

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 253 VWSCSTSLRYQTSYFK-GSDRLLPEICR 333
           +WSCSTS+R +TS FK GS  LL  + R
Sbjct: 154 LWSCSTSMRNRTSIFKAGSVPLLARLIR 181


>SB_36586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 55 WMGSRLASCTACSPGDPL 2
          W GS + +  +CSPGDPL
Sbjct: 4  WFGSGIRTSNSCSPGDPL 21


>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +2

Query: 410 CEPKK-FGGPGARARYQKSYR*AFKKTIGWYRRGSCCHC 523
           C+P    G PG    Y + YR        WY + +C  C
Sbjct: 792 CDPNAGIGNPGPEGNYTQVYRAPCSYVFAWYSKYACPKC 830


>SB_58307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 276

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 82  FLRPNTWTAWM-GSRLASCT-ACSPGDPL 2
           +L P+TW  +   SRL   + +CSPGDPL
Sbjct: 134 YLSPSTWFPYSRNSRLEKISNSCSPGDPL 162


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 224 REFFLAEQKDRFLKFVLQQSGLNQ--VQWAP 138
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_3149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 70 NTWTAWMGSRLASCTACSPGDPL 2
          NT   W+ S  +   +CSPGDPL
Sbjct: 7  NTGFVWVLSFFSPSNSCSPGDPL 29


>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2541

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = +2

Query: 257 GHVAQ--VYAIRQAISKALIAFYQKYV-DEASKKEIKDILVQYDRSLLVADPRRCEPK 421
           GH++Q  +  I Q   K L A + K + DE  K++ K+I V+ +RS +    ++ EP+
Sbjct: 94  GHLSQPKLKKITQVNKKKLRATHHKAILDEIMKEKAKEIDVKKERSTISRRGKKREPE 151


>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 116 SWNAACKRAPIGLG*AQTAAVQTSGTYPFARQGKILYG 229
           SW  A K+ P G G  ++     +G Y   R G+  YG
Sbjct: 19  SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56


>SB_17747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 88  AVFLRPNTW-TAWMGSRLASCTACSPGDPL 2
           A+ L P+T  T ++ +RL    +CSPGDPL
Sbjct: 36  ALSLVPSTSVTLFIENRLMRSNSCSPGDPL 65


>SB_15671| Best HMM Match : DUF765 (HMM E-Value=9.6)
          Length = 139

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 67 TWTAWMGSRLASCTACSPGDPL 2
          T+TA      AS  +CSPGDPL
Sbjct: 4  TYTAGTNLVTASSNSCSPGDPL 25


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,573,539
Number of Sequences: 59808
Number of extensions: 427998
Number of successful extensions: 2112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2112
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)