Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30626.Seq
         (587 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein...    25   1.8  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         23   9.7  
AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.          23   9.7  
AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.          23   9.7  
AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.          23   9.7  
AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.          23   9.7  

>AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 459

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 245 SQGCGHVAQVYAIRQAISKALIAFYQKYV-DEASKKEI 355
           S GC  VA V A+ + I+ A   FY KYV D+  +K I
Sbjct: 145 SSGC--VAFVMALERYIALAKPFFYHKYVTDKLIRKSI 180


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = -3

Query: 540 HHPMISQ*QHEPRRYHP 490
           HHP +    H P  Y P
Sbjct: 134 HHPSVHHPAHHPLHYQP 150


>AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +2

Query: 281 IRQAISK---ALIAFYQKYVDEASKKEIK 358
           ++Q +SK   AL +F ++ +DE ++ E+K
Sbjct: 95  VKQEVSKRCKALASFMEELMDEVAQPELK 123


>AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +2

Query: 281 IRQAISK---ALIAFYQKYVDEASKKEIK 358
           ++Q +SK   AL +F ++ +DE ++ E+K
Sbjct: 95  VKQEVSKRCKALASFMEELMDEVAQPELK 123


>AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +2

Query: 281 IRQAISK---ALIAFYQKYVDEASKKEIK 358
           ++Q +SK   AL +F ++ +DE ++ E+K
Sbjct: 95  VKQEVSKRCKALASFMEELMDEVAQPELK 123


>AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +2

Query: 281 IRQAISK---ALIAFYQKYVDEASKKEIK 358
           ++Q +SK   AL +F ++ +DE ++ E+K
Sbjct: 95  VKQEVSKRCKALASFMEELMDEVAQPELK 123


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,155
Number of Sequences: 2352
Number of extensions: 12688
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 56347938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)