Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30626.Seq
(587 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 143 4e-34
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 143 4e-34
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 143 4e-34
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 143 4e-34
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 116 8e-26
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 61 3e-09
Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex late... 31 3.0
BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for IM... 31 3.0
BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex pr... 31 3.0
BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex pr... 31 3.0
BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal... 31 3.0
BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein. 31 3.0
BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein. 31 3.0
AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex pr... 31 3.0
AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex pr... 31 3.0
AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex p... 31 3.0
AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex pr... 31 3.0
AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein pr... 31 3.0
BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for IM... 30 7.0
AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein. 30 7.0
AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein. 30 7.0
BC117394-1|AAI17395.1| 360|Homo sapiens chromosome 12 open read... 29 9.2
BC117392-1|AAI17393.1| 360|Homo sapiens chromosome 12 open read... 29 9.2
BC044617-1|AAH44617.1| 265|Homo sapiens C12orf42 protein protein. 29 9.2
AK058052-1|BAB71641.1| 360|Homo sapiens protein ( Homo sapiens ... 29 9.2
AF202637-1|AAG22491.1| 155|Homo sapiens PP3111 protein. 29 9.2
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 143 bits (347), Expect = 4e-34
Identities = 65/74 (87%), Positives = 72/74 (97%)
Frame = +2
Query: 248 QGCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 427
+G GHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKF
Sbjct: 73 KGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKF 132
Query: 428 GGPGARARYQKSYR 469
GGPGARARYQKSYR
Sbjct: 133 GGPGARARYQKSYR 146
Score = 116 bits (278), Expect = 8e-26
Identities = 51/69 (73%), Positives = 64/69 (92%)
Frame = +3
Query: 48 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 227
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 228 VXIRVTVKG 254
V IRV VKG
Sbjct: 66 VDIRVRVKG 74
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 143 bits (347), Expect = 4e-34
Identities = 65/74 (87%), Positives = 72/74 (97%)
Frame = +2
Query: 248 QGCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 427
+G GHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKF
Sbjct: 73 KGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKF 132
Query: 428 GGPGARARYQKSYR 469
GGPGARARYQKSYR
Sbjct: 133 GGPGARARYQKSYR 146
Score = 116 bits (278), Expect = 8e-26
Identities = 51/69 (73%), Positives = 64/69 (92%)
Frame = +3
Query: 48 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 227
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 228 VXIRVTVKG 254
V IRV VKG
Sbjct: 66 VDIRVRVKG 74
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 143 bits (347), Expect = 4e-34
Identities = 65/74 (87%), Positives = 72/74 (97%)
Frame = +2
Query: 248 QGCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 427
+G GHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKF
Sbjct: 73 KGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKF 132
Query: 428 GGPGARARYQKSYR 469
GGPGARARYQKSYR
Sbjct: 133 GGPGARARYQKSYR 146
Score = 116 bits (278), Expect = 8e-26
Identities = 51/69 (73%), Positives = 64/69 (92%)
Frame = +3
Query: 48 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 227
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 228 VXIRVTVKG 254
V IRV VKG
Sbjct: 66 VDIRVRVKG 74
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 143 bits (347), Expect = 4e-34
Identities = 65/74 (87%), Positives = 72/74 (97%)
Frame = +2
Query: 248 QGCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 427
+G GHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKF
Sbjct: 73 KGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKF 132
Query: 428 GGPGARARYQKSYR 469
GGPGARARYQKSYR
Sbjct: 133 GGPGARARYQKSYR 146
Score = 116 bits (278), Expect = 8e-26
Identities = 51/69 (73%), Positives = 64/69 (92%)
Frame = +3
Query: 48 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 227
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 228 VXIRVTVKG 254
V IRV VKG
Sbjct: 66 VDIRVRVKG 74
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 116 bits (278), Expect = 8e-26
Identities = 51/69 (73%), Positives = 64/69 (92%)
Frame = +3
Query: 48 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 227
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 228 VXIRVTVKG 254
V IRV VKG
Sbjct: 66 VDIRVRVKG 74
Score = 30.7 bits (66), Expect = 4.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 312 PSTRNM*TKPQRRKSKTS*YNTIGVCW 392
P TRNM + RR+SKTS + G CW
Sbjct: 126 PITRNMWMRLPRRRSKTSSSSMTGPCW 152
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 60.9 bits (141), Expect = 3e-09
Identities = 31/68 (45%), Positives = 44/68 (64%)
Frame = +3
Query: 51 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 230
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 231 XIRVTVKG 254
I V VKG
Sbjct: 78 DIHVRVKG 85
Score = 53.6 bits (123), Expect = 5e-07
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +2
Query: 248 QGCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 373
+G GHV Q+YA+ Q ISKAL+ Y KYVDEAS +EIKD L +
Sbjct: 84 KGSGHVVQIYAVLQYISKALVPCYPKYVDEAS-EEIKDTLTR 124
>Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex lateral
element protein protein.
Length = 1530
Score = 31.1 bits (67), Expect = 3.0
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for
IMAGE:8860302) protein.
Length = 792
Score = 31.1 bits (67), Expect = 3.0
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 338 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 381
>BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 3.0
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 3.0
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal
protein S9 protein.
Length = 396
Score = 31.1 bits (67), Expect = 3.0
Identities = 26/68 (38%), Positives = 32/68 (47%)
Frame = +2
Query: 251 GCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 430
G G AQ AIR A++KAL +F + DE LL DPR E KK G
Sbjct: 334 GGGRSAQAGAIRLAMAKALCSFVTE--DEVEWMR--------QAGLLTTDPRVRERKKPG 383
Query: 431 GPGARARY 454
GAR ++
Sbjct: 384 QEGARRKF 391
>BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein.
Length = 302
Score = 31.1 bits (67), Expect = 3.0
Identities = 26/68 (38%), Positives = 32/68 (47%)
Frame = +2
Query: 251 GCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 430
G G AQ AIR A++KAL +F + DE LL DPR E KK G
Sbjct: 240 GGGRSAQAGAIRLAMAKALCSFVTE--DEVEWMR--------QAGLLTTDPRVRERKKPG 289
Query: 431 GPGARARY 454
GAR ++
Sbjct: 290 QEGARRKF 297
>BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein.
Length = 1024
Score = 31.1 bits (67), Expect = 3.0
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 3.0
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 3.0
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 3.0
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 3.0
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein
protein.
Length = 520
Score = 31.1 bits (67), Expect = 3.0
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 61 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 104
>BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for
IMAGE:6451327) protein.
Length = 204
Score = 29.9 bits (64), Expect = 7.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 338 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 421
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein.
Length = 689
Score = 29.9 bits (64), Expect = 7.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 338 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 421
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein.
Length = 198
Score = 29.9 bits (64), Expect = 7.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 338 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 421
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>BC117394-1|AAI17395.1| 360|Homo sapiens chromosome 12 open reading
frame 42 protein.
Length = 360
Score = 29.5 bits (63), Expect = 9.2
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 90 WRFSYV-RILGRPGWAHVLPPAQPAARGIH 4
W S++ +++ +P WAH + P A+GIH
Sbjct: 162 WNSSFLEQLVKKPNWAHSVNPVHLEAQGIH 191
>BC117392-1|AAI17393.1| 360|Homo sapiens chromosome 12 open reading
frame 42 protein.
Length = 360
Score = 29.5 bits (63), Expect = 9.2
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 90 WRFSYV-RILGRPGWAHVLPPAQPAARGIH 4
W S++ +++ +P WAH + P A+GIH
Sbjct: 162 WNSSFLEQLVKKPNWAHSVNPVHLEAQGIH 191
>BC044617-1|AAH44617.1| 265|Homo sapiens C12orf42 protein protein.
Length = 265
Score = 29.5 bits (63), Expect = 9.2
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 90 WRFSYV-RILGRPGWAHVLPPAQPAARGIH 4
W S++ +++ +P WAH + P A+GIH
Sbjct: 67 WNSSFLEQLVKKPNWAHSVNPVHLEAQGIH 96
>AK058052-1|BAB71641.1| 360|Homo sapiens protein ( Homo sapiens
cDNA FLJ25323 fis, clone TST00323. ).
Length = 360
Score = 29.5 bits (63), Expect = 9.2
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 90 WRFSYV-RILGRPGWAHVLPPAQPAARGIH 4
W S++ +++ +P WAH + P A+GIH
Sbjct: 162 WNSSFLEQLVKKPNWAHSVNPVHLEAQGIH 191
>AF202637-1|AAG22491.1| 155|Homo sapiens PP3111 protein.
Length = 155
Score = 29.5 bits (63), Expect = 9.2
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 130 RSIP*PRLQYATAVAVFLRPNTWTAWMGSRLA-SCTACS 17
RS P RLQ A FL+PN + W G R + SC + S
Sbjct: 25 RSEPPKRLQTAQVTDCFLKPNWRSLWPGKRPSLSCRSLS 63
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,680,108
Number of Sequences: 237096
Number of extensions: 2178908
Number of successful extensions: 5024
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 4807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5022
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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