Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30626.Seq
         (587 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070671-1|AAL48142.1|  148|Drosophila melanogaster RH07540p pro...   147   8e-36
AE013599-3413|AAF46862.1|  148|Drosophila melanogaster CG4046-PA...   147   8e-36
AY089671-1|AAL90409.1|  395|Drosophila melanogaster RH44312p pro...    31   0.88 
AE014297-663|AAF54157.3|  395|Drosophila melanogaster CG2957-PA ...    31   0.88 

>AY070671-1|AAL48142.1|  148|Drosophila melanogaster RH07540p
           protein.
          Length = 148

 Score =  147 bits (357), Expect = 8e-36
 Identities = 68/73 (93%), Positives = 71/73 (97%)
 Frame = +2

Query: 251 GCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 430
           G GHVAQ+YAIRQAISKAL+AFYQKYVDEASKKEIKDILVQYDR+LLV DPRRCEPKKFG
Sbjct: 76  GGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFG 135

Query: 431 GPGARARYQKSYR 469
           GPGARARYQKSYR
Sbjct: 136 GPGARARYQKSYR 148



 Score =  128 bits (310), Expect = 4e-30
 Identities = 58/76 (76%), Positives = 70/76 (92%)
 Frame = +3

Query: 27  VQEARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLL 206
           +Q+ RREP+QAVQVFGRKKTATAVAYCKRG+G+L+VNGRPL+ +EP++LQYKLQEP+LLL
Sbjct: 1   MQQKRREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLL 60

Query: 207 GKEKFSMVXIRVTVKG 254
           GKEKF+ V IRV V G
Sbjct: 61  GKEKFAGVDIRVRVSG 76


>AE013599-3413|AAF46862.1|  148|Drosophila melanogaster CG4046-PA
           protein.
          Length = 148

 Score =  147 bits (357), Expect = 8e-36
 Identities = 68/73 (93%), Positives = 71/73 (97%)
 Frame = +2

Query: 251 GCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 430
           G GHVAQ+YAIRQAISKAL+AFYQKYVDEASKKEIKDILVQYDR+LLV DPRRCEPKKFG
Sbjct: 76  GGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFG 135

Query: 431 GPGARARYQKSYR 469
           GPGARARYQKSYR
Sbjct: 136 GPGARARYQKSYR 148



 Score =  128 bits (310), Expect = 4e-30
 Identities = 58/76 (76%), Positives = 70/76 (92%)
 Frame = +3

Query: 27  VQEARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLL 206
           +Q+ RREP+QAVQVFGRKKTATAVAYCKRG+G+L+VNGRPL+ +EP++LQYKLQEP+LLL
Sbjct: 1   MQQKRREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLL 60

Query: 207 GKEKFSMVXIRVTVKG 254
           GKEKF+ V IRV V G
Sbjct: 61  GKEKFAGVDIRVRVSG 76


>AY089671-1|AAL90409.1|  395|Drosophila melanogaster RH44312p
           protein.
          Length = 395

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 24/73 (32%), Positives = 36/73 (49%)
 Frame = +2

Query: 236 QSDSQGCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 415
           +++ +G G   Q  AIR  I+ +L +F  + + E+ +             LL  D RR E
Sbjct: 328 EANVEGGGPSGQAGAIRWGIAMSLRSFVDQEMIESMRLA----------GLLTRDYRRRE 377

Query: 416 PKKFGGPGARARY 454
            KKFG  GAR +Y
Sbjct: 378 RKKFGQEGARRKY 390


>AE014297-663|AAF54157.3|  395|Drosophila melanogaster CG2957-PA
           protein.
          Length = 395

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 24/73 (32%), Positives = 36/73 (49%)
 Frame = +2

Query: 236 QSDSQGCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 415
           +++ +G G   Q  AIR  I+ +L +F  + + E+ +             LL  D RR E
Sbjct: 328 EANVEGGGPSGQAGAIRWGIAMSLRSFVDQEMIESMRLA----------GLLTRDYRRRE 377

Query: 416 PKKFGGPGARARY 454
            KKFG  GAR +Y
Sbjct: 378 RKKFGQEGARRKY 390


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,443,847
Number of Sequences: 53049
Number of extensions: 609944
Number of successful extensions: 1673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2358819486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)