Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30626.Seq
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           134   3e-32
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   134   3e-32
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   129   2e-30
At1g43570.1 68414.m05001 hypothetical protein                          31   0.43 
At1g18140.1 68414.m02250 laccase family protein / diphenol oxida...    30   1.00 
At3g24255.1 68416.m03045 expressed protein                             27   7.0  

>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  134 bits (325), Expect = 3e-32
 Identities = 61/73 (83%), Positives = 69/73 (94%)
 Frame = +2

Query: 251 GCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 430
           G GH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFG
Sbjct: 74  GGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG 133

Query: 431 GPGARARYQKSYR 469
           G GAR+RYQKSYR
Sbjct: 134 GRGARSRYQKSYR 146



 Score = 87.0 bits (206), Expect = 8e-18
 Identities = 36/73 (49%), Positives = 56/73 (76%)
 Frame = +3

Query: 36  ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 215
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query: 216 KFSMVXIRVTVKG 254
           +F+ V +R+ V G
Sbjct: 62  RFAGVNMRIRVNG 74


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  134 bits (325), Expect = 3e-32
 Identities = 61/73 (83%), Positives = 69/73 (94%)
 Frame = +2

Query: 251 GCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 430
           G GH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFG
Sbjct: 74  GGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG 133

Query: 431 GPGARARYQKSYR 469
           G GAR+RYQKSYR
Sbjct: 134 GRGARSRYQKSYR 146



 Score = 87.4 bits (207), Expect = 6e-18
 Identities = 37/73 (50%), Positives = 56/73 (76%)
 Frame = +3

Query: 36  ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 215
           A +   ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK 
Sbjct: 2   ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query: 216 KFSMVXIRVTVKG 254
           +F+ V +R+ V G
Sbjct: 62  RFAGVNMRIRVNG 74


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  129 bits (311), Expect = 2e-30
 Identities = 58/73 (79%), Positives = 69/73 (94%)
 Frame = +2

Query: 251 GCGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 430
           G G+ ++VYAIRQ+I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRCE KKFG
Sbjct: 74  GGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFG 133

Query: 431 GPGARARYQKSYR 469
           GPGARAR+QKSYR
Sbjct: 134 GPGARARFQKSYR 146



 Score = 90.6 bits (215), Expect = 7e-19
 Identities = 37/67 (55%), Positives = 54/67 (80%)
 Frame = +3

Query: 54  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVX 233
           ++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ V 
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 234 IRVTVKG 254
           +R+   G
Sbjct: 68  MRIRATG 74


>At1g43570.1 68414.m05001 hypothetical protein
          Length = 348

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 411 QRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 304
           +R  S T + LSYC R+ LI     S T FW  A R
Sbjct: 19  KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54


>At1g18140.1 68414.m02250 laccase family protein / diphenol oxidase
           family protein similar to high-pI laccase (LAC2-1)
           GI:1621460 from [Liriodendron tulipifera]
          Length = 581

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 515 NTSRDDTTRWFS*RLNGKISGIW--HGHLDHRTSW 417
           NT    T  W + R+N    G+W  H HL+  TSW
Sbjct: 519 NTFAVPTGGWAAIRINADNPGVWFIHCHLEQHTSW 553


>At3g24255.1 68416.m03045 expressed protein
          Length = 836

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 408 RRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAFEIACL 283
           R G  T++ LS+  R+ LIS    S T FW  A R    AC+
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR-LPSACI 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,390,303
Number of Sequences: 28952
Number of extensions: 284180
Number of successful extensions: 756
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)