Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30625.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    52   1e-07
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    28   1.1  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    28   1.1  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    28   1.5  
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    27   2.6  
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    27   2.6  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   6.0  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   6.0  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    26   6.0  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   6.0  

>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
 Frame = +3

Query: 270 RMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIG-TENSRPSSAAQC 446
           RMAAGL LKN +T+++   K +YQQ W +L  +++  +K   L  +G +E+    SAAQ 
Sbjct: 54  RMAAGLALKNAITAREEARKLEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQL 113

Query: 447 VAYVGS 464
           VA + +
Sbjct: 114 VAAIAA 119



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 5/193 (2%)
 Frame = +1

Query: 124 QILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGTVKWLGWQLVCXXXXX 303
           + L +T+SPD N    A + L++AA T+F  ++ +L+  L    ++ ++    +      
Sbjct: 5   EFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYI---RMAAGLAL 61

Query: 304 XXXXXXXXXXXXXXDGWLWQKMFDFI*KKIY*LL*EQ--RIVVQVQQHSVWRMWAVA--E 471
                            LWQ +   I +++  L  +       Q  Q +   + A+A  E
Sbjct: 62  KNAITAREEARKLEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQLVAAIAAYE 121

Query: 472 LPVGQWE*SNTNFVENVVHVQSTELKRKRLWRLLGYIVRILMLK-FNRKKYPIPTGIIHG 648
           L   QW       V NV   Q + LK+  L + +GYI   +  +  + +   I T ++ G
Sbjct: 122 LATNQWPDLMVTLVANVGEGQPSALKQHSL-QTIGYICESVSPEVLSAQSNAILTAVVAG 180

Query: 649 MRATEPSNHVRLS 687
            R  EP   VRL+
Sbjct: 181 ARKEEPDAAVRLA 193


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/70 (22%), Positives = 31/70 (44%)
 Frame = -1

Query: 383 YIKSNIFCQSQPSLLILLFKCRIFRSEMIFQLQTSCHPSHLTVPPWRRTSDNILMNVVKF 204
           YI  N F  +     +LLF   +F    +F +Q   H +H   P  +   +  L+  ++ 
Sbjct: 11  YIDINFFRNATLDQCLLLFYLSLFSLTNLFLIQKLFHANHTQHPLKKYFGETCLLEYIQI 70

Query: 203 VVAAWSRYLT 174
           +++  S  L+
Sbjct: 71  ILSIVSAALS 80


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -1

Query: 323 CRIFRSEMIFQLQTSCHPSHLTVPPWRRTSDN 228
           C     E I QL TSC   H  +P W    D+
Sbjct: 61  CNKNEQEAIIQLLTSCEGDHWLMPDWSSMPDD 92


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/48 (27%), Positives = 31/48 (64%)
 Frame = +2

Query: 41  KNRIESVFCNINLRIVKQCTQKQH*RLYKYLRRQFHLIEMNWKQQLDT 184
           ++++E+   N N +++K+ +++Q  R YK + ++   IE+N   Q+D+
Sbjct: 742 RSKLEAYHINCN-KVIKEFSKRQTAR-YKIIEKELAQIEVNLVSQIDS 787


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 478 VGQWE*SNTNFVENVVHVQSTELKRKRLWRLL-GYIVRILMLKFNRKKYPIPTGIIHGMR 654
           V  WE    N +         +  R+  ++   GY++  + ++   +K P+P G  +G  
Sbjct: 25  VRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGQTYGKP 84

Query: 655 ATEPSNHVR 681
             +  NH++
Sbjct: 85  VHQGVNHLK 93


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 478 VGQWE*SNTNFVENVVHVQSTELKRKRLWRLL-GYIVRILMLKFNRKKYPIPTGIIHGMR 654
           V  WE    N +         +  R+  ++   GY++  + ++   +K P+P G  +G  
Sbjct: 25  VRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGQTYGKP 84

Query: 655 ATEPSNHVR 681
             +  NH++
Sbjct: 85  VHQGVNHLK 93


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 517 NVVHVQSTELKRKRLWRLLGYIVRIL 594
           N +H+  TE K   LW+   YI+  L
Sbjct: 315 NCLHLLHTEYKNSSLWKFCSYILDAL 340


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 76  LKNSETMHAETTLTLIQILEKTVSPDRNELEAAVRYLDH 192
           +KN +  H +T L  + IL++    D  +    +RYL H
Sbjct: 549 IKNRQKFHGQT-LVEVGILKRLCEADPADKNNVIRYLSH 586


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 547 KRKRLWRLLGYIVRILMLKFNRKKY 621
           K K L+ LLG IV IL     RK+Y
Sbjct: 74  KSKELYTLLGLIVNILRNTETRKRY 98


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 179 LTAASNSFRSGETVFSSICISVNVVSACI 93
           LTA + S  +G ++ S+I ++ N++SA I
Sbjct: 117 LTAYATSAFAGHSLLSTIAVANNIISAAI 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,379
Number of Sequences: 5004
Number of extensions: 59404
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)