Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30625.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0648 + 16563147-16565557,16565655-16565850 54 8e-08
03_02_0662 - 10250235-10250433,10250692-10253105 53 3e-07
12_02_0820 + 23437811-23440230,23440336-23440534 47 1e-05
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 32 0.38
02_05_0223 - 26943210-26944623,26944741-26945666 29 3.5
01_05_0681 - 24242485-24242560,24242721-24242785,24242874-242430... 29 4.7
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 28 6.2
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535... 28 8.2
>05_03_0648 + 16563147-16565557,16565655-16565850
Length = 868
Score = 54.4 bits (125), Expect = 8e-08
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Frame = +3
Query: 267 ARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTE-NSRPSSAAQ 443
+R AG+ LKN L +KD K+ Q+W++L ++ IKE++L +G+ + +++Q
Sbjct: 53 SRRLAGIILKNSLDAKDSAKKELLIQQWVSLDPSIKQKIKESLLITLGSSVHDARHTSSQ 112
Query: 444 CVAYVGSS*APSRTMGMI*YQFCRKCCSCPIY*TQKEATLEAIGLHCQDIDAEV*QKEVS 623
+A V S P R + + K+ATLEA+G C++I E +++
Sbjct: 113 VIAKVASIEIPRREWQELIAKLLGNMTQQGAPAPLKQATLEALGYVCEEISPEHLEQDQV 172
Query: 624 NS 629
N+
Sbjct: 173 NA 174
>03_02_0662 - 10250235-10250433,10250692-10253105
Length = 870
Score = 52.8 bits (121), Expect = 3e-07
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 2/127 (1%)
Frame = +3
Query: 255 NSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTE--NSRP 428
N +R AG+ LKN L +K+ T K+++ QRW+ + ++ +KE++L +G+ +R
Sbjct: 49 NPPESRRLAGILLKNSLDAKESTRKEEFVQRWMNVDPAIKSQVKESLLITLGSPVFEARR 108
Query: 429 SSAAQCVAYVGSS*APSRTMGMI*YQFCRKCCSCPIY*TQKEATLEAIGLHCQDIDAEV* 608
SS +Q +A V + P + + K+ATL+ +G C++I E
Sbjct: 109 SS-SQVIAKVAAIEIPHQGWPELIVNLLTNMTKPDAPPCLKQATLDCLGYVCEEISPEDL 167
Query: 609 QKEVSNS 629
+++ N+
Sbjct: 168 EQDQVNA 174
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 47.2 bits (107), Expect = 1e-05
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Frame = +3
Query: 267 ARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTE-NSRPSSAAQ 443
+R AGL LKN L +K+ K + QRWLAL V+ IK +L + + S S+++Q
Sbjct: 55 SRRLAGLILKNALDAKEQHRKNELFQRWLALDVGVKAQIKGFLLQTLSSPVASARSTSSQ 114
Query: 444 CVAYVGSS*APSRTMGMI*YQFCRKCCSCPIY*TQKEATLEAIGLHCQDIDAEV*QKEVS 623
+A V P + + + K+ATLE +G C+++ E ++
Sbjct: 115 VIAKVAGIEIPQKQWPELIASLLSNIHQ--VQPNVKQATLETLGYLCEEVSPEAVDQDQV 172
Query: 624 N 626
N
Sbjct: 173 N 173
>01_06_1801 - 39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 32.3 bits (70), Expect = 0.38
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Frame = +3
Query: 267 ARMAAGLQLKNHLTSKDPTLKQQ-----YQQRWLALAEDVRLYIKENILAAIGTENSRPS 431
A++ G Q + LT+KD +++ + +++ A+ D + K+N LAA G++N PS
Sbjct: 1267 AKIVPGNQSADPLTAKDQSVRAKSIEGRHERSEAAMKPDAQQ--KKNALAANGSDNQMPS 1324
Query: 432 SAAQ 443
S+AQ
Sbjct: 1325 SSAQ 1328
>02_05_0223 - 26943210-26944623,26944741-26945666
Length = 779
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 297 NHLTSKDPTLKQQYQQR-WLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYVGSS*A 473
++L+ P ++Q ++R + L E L I+E IL A T + R S A CVA G
Sbjct: 346 HYLSDVRPAAREQERERKCIGLVE---LGIREAILTATRTRDGRGSCDAYCVAKYGVKWY 402
Query: 474 PSRTM 488
+RT+
Sbjct: 403 RTRTV 407
>01_05_0681 -
24242485-24242560,24242721-24242785,24242874-24243029,
24243073-24243121,24243291-24243366,24243456-24243666,
24244038-24244160,24244245-24244363,24244439-24244532,
24245123-24245233,24245336-24245392
Length = 378
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 25 RFLFFKKQD*VSLLQHKLKNSETMHAETTLTLIQILEKTVSPDRNELE 168
R+ K++ VS Q+ NS+ + T LTL++ +PD +ELE
Sbjct: 164 RYFCLAKREPVSF-QNPSDNSKLLRTPTFLTLVRAGHNRCNPDEDELE 210
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 70 HKLKNSETMHAETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDV 240
H +KN + H + + L T++ + L RYLD T + +K L DV
Sbjct: 456 HYMKNFDVGHVPLRVAKAKQLLGTINNNFGTLAFCRRYLDRLGETKYLMALKNLCDV 512
>04_04_1122 +
31052497-31052629,31053133-31053191,31053285-31053579,
31054099-31054279,31054739-31054956,31055522-31055739,
31055842-31055958,31056106-31056128,31056223-31056438,
31056536-31056677,31056822-31057067,31057659-31057856,
31058331-31058379,31060835-31060911,31061266-31061551,
31061661-31061841,31062149-31062344,31062630-31062738,
31062861-31062961,31063155-31063267,31063347-31063442,
31063531-31063746,31063857-31063995,31064087-31064332,
31064605-31064940
Length = 1396
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 469 ELPVGQWE*SNTNFVENVVHVQSTELKRK 555
E+P+GQ + VE V+H+Q TELKR+
Sbjct: 202 EVPIGQTD------VERVLHLQETELKRE 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,935,881
Number of Sequences: 37544
Number of extensions: 382143
Number of successful extensions: 1049
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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