Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30625.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)                 80   1e-15
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)                 29   2.7  
SB_21750| Best HMM Match : Dynamin_M (HMM E-Value=0)                   28   6.3  
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_27633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_10401| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_4764| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)          28   8.4  

>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
          Length = 681

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 38/62 (61%), Positives = 48/62 (77%)
 Frame = +3

Query: 258 SQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSA 437
           SQVARMAAGLQLKN LTSKD  ++ QYQQRWL L ++VR ++K+  LA +G E +RP+ A
Sbjct: 50  SQVARMAAGLQLKNQLTSKDDIVRAQYQQRWLGLDKEVRDHVKKMSLATLGNETARPAIA 109

Query: 438 AQ 443
            Q
Sbjct: 110 PQ 111



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/47 (44%), Positives = 30/47 (63%)
 Frame = +1

Query: 112 LTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQG 252
           + L ++LE TVSPD  EL+AA +YL+ AA  N   F+ +L + L  G
Sbjct: 1   MDLTKVLEATVSPDLAELQAAQKYLEEAAQVNLPQFLLVLVNELADG 47



 Score = 31.5 bits (68), Expect = 0.68
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +1

Query: 625 IPTGIIHGMRATEPSNHVRLS 687
           I T II GMR  EPSNH+RL+
Sbjct: 123 ILTVIIQGMRKEEPSNHIRLA 143


>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
          Length = 921

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = +3

Query: 255 NSQVARMAAGLQLKNHLTS--KDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRP 428
           NS+ AR A  LQ+ N+  S  +D T+K     +  A AED+ + I  + ++ I   +S P
Sbjct: 235 NSENARHA--LQISNYADSLVRDTTIKAVKDVQTYAFAEDLSIDIIGDAMSEIPQTDSVP 292

Query: 429 SSAA 440
           SS++
Sbjct: 293 SSSS 296


>SB_21750| Best HMM Match : Dynamin_M (HMM E-Value=0)
          Length = 498

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 249 RWNSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKEN 392
           +  +Q  +     QL NH+    P L+ + Q   LAL ++V+ Y   N
Sbjct: 271 KMGTQYLQKVLNQQLTNHIKDTLPALRSKLQDNLLALEKEVKGYENYN 318


>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 303 LTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENS--RPSSAAQCVAYVGSS*AP 476
           L  K+ +LK+Q+ QR    +  VR  +   ++   GT+ S  +P       A + ++ A 
Sbjct: 284 LNEKERSLKEQFMQRQDKKSAPVRRVVMPTVIPTQGTQQSGPKPDDPVSTAAAIAAAAAS 343

Query: 477 SRTM 488
           + T+
Sbjct: 344 AATV 347


>SB_27633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 236 SDNILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSA-CIVSL 84
           SD +L   +  + AAW+ YLT       +   +F+ I I   + S+ C+VSL
Sbjct: 60  SDLLLGLTMNAIYAAWNGYLTEKQKVSATVREIFAWIFIFTAMTSSLCLVSL 111


>SB_10401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +1

Query: 64  LQHKLKNSETMHAETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVL 243
           LQ +L+NS  MHA     LI  +   VS     + +A  +  H   T     +   S + 
Sbjct: 113 LQFRLRNSTVMHAGRVEVLIAGIWGGVSFQHWTINSAHVFCRHVGYTGADMVVSGASILF 172

Query: 244 LQGGTVKW 267
               T+KW
Sbjct: 173 KLSHTIKW 180


>SB_4764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = -1

Query: 275 HPSHLTVPPWRRTSDNILMNVVKFVVAA 192
           +P  LTVPP RR SD  L N V FV +A
Sbjct: 123 NPPPLTVPPLRRYSD--LANSVSFVSSA 148


>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
          Length = 1248

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 211 TTFIKMLSDVLLQGGTVKWLG 273
           +T+I ++ DVLL GG V +LG
Sbjct: 532 STYINIVGDVLLSGGIVAYLG 552


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,374,292
Number of Sequences: 59808
Number of extensions: 424357
Number of successful extensions: 1148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)