Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30625.Seq
(698 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118657-1|AAM50026.1| 884|Drosophila melanogaster SD08803p pro... 117 1e-26
AF222745-1|AAF34680.1| 884|Drosophila melanogaster importin bet... 117 1e-26
AE014134-3276|AAF53918.1| 884|Drosophila melanogaster CG2637-PA... 117 1e-26
AJ002729-1|CAA05691.2| 884|Drosophila melanogaster importin bet... 115 5e-26
AY069504-1|AAL39649.1| 861|Drosophila melanogaster LD22651p pro... 29 6.1
AE014134-1340|AAF52557.1| 861|Drosophila melanogaster CG7154-PA... 29 6.1
>AY118657-1|AAM50026.1| 884|Drosophila melanogaster SD08803p
protein.
Length = 884
Score = 117 bits (282), Expect = 1e-26
Identities = 63/113 (55%), Positives = 71/113 (62%)
Frame = +3
Query: 255 NSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSS 434
NS VARMAAGLQLKNHLTSKD + QQYQ RW ++R IK NILAA+GTEN+RPS
Sbjct: 55 NSAVARMAAGLQLKNHLTSKDEKVSQQYQDRWHQFPSEIRELIKNNILAALGTENTRPSC 114
Query: 435 AAQCVAYVGSS*APSRTMGMI*YQFCRKCCSCPIY*TQKEATLEAIGLHCQDI 593
AAQCVAYV P M+ K S +E+ LEAIG CQDI
Sbjct: 115 AAQCVAYVAVIELPINRWPMLIQTLVNKVVSEGSSEMHRESALEAIGYICQDI 167
Score = 55.6 bits (128), Expect = 6e-08
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 460 AVAELPVGQWE*SNTNFVENVVHVQSTELKRKRLWRLLGYIVRILMLK-FNRKKYPIPTG 636
AV ELP+ +W V VV S+E+ R+ +GYI + + + + T
Sbjct: 123 AVIELPINRWPMLIQTLVNKVVSEGSSEMHRESALEAIGYICQDIRFGVMENQSNDVLTA 182
Query: 637 IIHGMRATEPSNHVRLS 687
IIHGMR EPSNHVRL+
Sbjct: 183 IIHGMRKVEPSNHVRLA 199
Score = 54.8 bits (126), Expect = 1e-07
Identities = 25/51 (49%), Positives = 37/51 (72%)
Frame = +1
Query: 94 MHAETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLL 246
M ++ + LI ILEKTVSPD+NEL +A +L+ AA +N F+K LS++L+
Sbjct: 1 MTSDIAMQLIAILEKTVSPDKNELLSAKNFLEQAAASNLPEFLKALSEILV 51
>AF222745-1|AAF34680.1| 884|Drosophila melanogaster importin beta
protein.
Length = 884
Score = 117 bits (282), Expect = 1e-26
Identities = 63/113 (55%), Positives = 71/113 (62%)
Frame = +3
Query: 255 NSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSS 434
NS VARMAAGLQLKNHLTSKD + QQYQ RW ++R IK NILAA+GTEN+RPS
Sbjct: 55 NSAVARMAAGLQLKNHLTSKDEKVSQQYQDRWHQFPSEIRELIKNNILAALGTENTRPSC 114
Query: 435 AAQCVAYVGSS*APSRTMGMI*YQFCRKCCSCPIY*TQKEATLEAIGLHCQDI 593
AAQCVAYV P M+ K S +E+ LEAIG CQDI
Sbjct: 115 AAQCVAYVAVIELPINRWPMLIQTLVNKVVSEGSSEMHRESALEAIGYICQDI 167
Score = 55.6 bits (128), Expect = 6e-08
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 460 AVAELPVGQWE*SNTNFVENVVHVQSTELKRKRLWRLLGYIVRILMLK-FNRKKYPIPTG 636
AV ELP+ +W V VV S+E+ R+ +GYI + + + + T
Sbjct: 123 AVIELPINRWPMLIQTLVNKVVSEGSSEMHRESALEAIGYICQDIRFGVMENQSNDVLTA 182
Query: 637 IIHGMRATEPSNHVRLS 687
IIHGMR EPSNHVRL+
Sbjct: 183 IIHGMRKVEPSNHVRLA 199
Score = 54.8 bits (126), Expect = 1e-07
Identities = 25/51 (49%), Positives = 37/51 (72%)
Frame = +1
Query: 94 MHAETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLL 246
M ++ + LI ILEKTVSPD+NEL +A +L+ AA +N F+K LS++L+
Sbjct: 1 MTSDIAMQLIAILEKTVSPDKNELLSAKNFLEQAAASNLPEFLKALSEILV 51
>AE014134-3276|AAF53918.1| 884|Drosophila melanogaster CG2637-PA
protein.
Length = 884
Score = 117 bits (282), Expect = 1e-26
Identities = 63/113 (55%), Positives = 71/113 (62%)
Frame = +3
Query: 255 NSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSS 434
NS VARMAAGLQLKNHLTSKD + QQYQ RW ++R IK NILAA+GTEN+RPS
Sbjct: 55 NSAVARMAAGLQLKNHLTSKDEKVSQQYQDRWHQFPSEIRELIKNNILAALGTENTRPSC 114
Query: 435 AAQCVAYVGSS*APSRTMGMI*YQFCRKCCSCPIY*TQKEATLEAIGLHCQDI 593
AAQCVAYV P M+ K S +E+ LEAIG CQDI
Sbjct: 115 AAQCVAYVAVIELPINRWPMLIQTLVNKVVSEGSSEMHRESALEAIGYICQDI 167
Score = 55.6 bits (128), Expect = 6e-08
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 460 AVAELPVGQWE*SNTNFVENVVHVQSTELKRKRLWRLLGYIVRILMLK-FNRKKYPIPTG 636
AV ELP+ +W V VV S+E+ R+ +GYI + + + + T
Sbjct: 123 AVIELPINRWPMLIQTLVNKVVSEGSSEMHRESALEAIGYICQDIRFGVMENQSNDVLTA 182
Query: 637 IIHGMRATEPSNHVRLS 687
IIHGMR EPSNHVRL+
Sbjct: 183 IIHGMRKVEPSNHVRLA 199
Score = 54.8 bits (126), Expect = 1e-07
Identities = 25/51 (49%), Positives = 37/51 (72%)
Frame = +1
Query: 94 MHAETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLL 246
M ++ + LI ILEKTVSPD+NEL +A +L+ AA +N F+K LS++L+
Sbjct: 1 MTSDIAMQLIAILEKTVSPDKNELLSAKNFLEQAAASNLPEFLKALSEILV 51
>AJ002729-1|CAA05691.2| 884|Drosophila melanogaster importin beta
protein.
Length = 884
Score = 115 bits (277), Expect = 5e-26
Identities = 62/113 (54%), Positives = 70/113 (61%)
Frame = +3
Query: 255 NSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSS 434
NS VARMAAGLQLKNHLT KD + QQYQ RW ++R IK NILAA+GTEN+RPS
Sbjct: 55 NSAVARMAAGLQLKNHLTRKDEKVSQQYQDRWHQFPSEIRELIKNNILAALGTENTRPSC 114
Query: 435 AAQCVAYVGSS*APSRTMGMI*YQFCRKCCSCPIY*TQKEATLEAIGLHCQDI 593
AAQCVAYV P M+ K S +E+ LEAIG CQDI
Sbjct: 115 AAQCVAYVAVIELPINRRPMLIQTLVNKVVSEGSSEMHRESALEAIGYICQDI 167
Score = 54.8 bits (126), Expect = 1e-07
Identities = 25/51 (49%), Positives = 37/51 (72%)
Frame = +1
Query: 94 MHAETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLL 246
M ++ + LI ILEKTVSPD+NEL +A +L+ AA +N F+K LS++L+
Sbjct: 1 MTSDIAMQLIAILEKTVSPDKNELLSAKNFLEQAAASNLPEFLKALSEILV 51
Score = 50.0 bits (114), Expect = 3e-06
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +1
Query: 460 AVAELPVGQWE*SNTNFVENVVHVQSTELKRKRLWRLLGYIVRILMLK-FNRKKYPIPTG 636
AV ELP+ + V VV S+E+ R+ +GYI + + + + T
Sbjct: 123 AVIELPINRRPMLIQTLVNKVVSEGSSEMHRESALEAIGYICQDIRFGVMENQSNDVLTA 182
Query: 637 IIHGMRATEPSNHVRLS 687
IIHGMR EPSNHVRL+
Sbjct: 183 IIHGMRKVEPSNHVRLA 199
>AY069504-1|AAL39649.1| 861|Drosophila melanogaster LD22651p
protein.
Length = 861
Score = 29.1 bits (62), Expect = 6.1
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +2
Query: 74 NLRIVKQCTQKQH*RLYKYLRRQFHLIEMNWKQQLDTSTMLPPQISQHSSKCCPMSFS 247
NL ++++ QH RL + L L++ ++++ T+ L QIS + K P + +
Sbjct: 712 NLTLIEKLRVAQHDRLSQPLPNHLGLVQPAGQEEIQTAQQLTQQISDLAKKLPPSAIA 769
>AE014134-1340|AAF52557.1| 861|Drosophila melanogaster CG7154-PA
protein.
Length = 861
Score = 29.1 bits (62), Expect = 6.1
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +2
Query: 74 NLRIVKQCTQKQH*RLYKYLRRQFHLIEMNWKQQLDTSTMLPPQISQHSSKCCPMSFS 247
NL ++++ QH RL + L L++ ++++ T+ L QIS + K P + +
Sbjct: 712 NLTLIEKLRVAQHDRLSQPLPNHLGLVQPAGQEEIQTAQQLTQQISDLAKKLPPSAIA 769
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,504,311
Number of Sequences: 53049
Number of extensions: 649281
Number of successful extensions: 1992
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1984
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -