Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30625.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 311 RSEMIFQLQTSCHPSHLTVPPWRRTSDNILMNVVKF 204
           RS  +    T C P  + V P R  +  I   +VKF
Sbjct: 261 RSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKF 296


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 609 VKLQHQYPDNVAQ*PPKSLPFEFSRLDMNNIFYKI 505
           +K+ H+Y  NV     K   + +  +D + I Y+I
Sbjct: 487 IKVDHEYDQNVWVLSNKLAMYLYGSIDSSKINYRI 521


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 176 LDTSTMLPPQISQHSSKCCPMS 241
           L+   M+PP I Q S    PM+
Sbjct: 575 LEVQVMVPPTIQQFSFTKLPMN 596


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,113
Number of Sequences: 438
Number of extensions: 3878
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)