Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30623.Seq
         (797 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    24   1.2  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    24   1.2  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    24   1.2  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   2.8  

>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 397 NDWRYSWSSQTVVPQIIQ 450
           +DW Y W  +  VP I++
Sbjct: 308 SDWDYFWDDEQQVPHIVK 325


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 397 NDWRYSWSSQTVVPQIIQ 450
           +DW Y W  +  VP I++
Sbjct: 309 SDWDYFWDDEQQVPHIVK 326


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 397 NDWRYSWSSQTVVPQIIQ 450
           +DW Y W  +  VP I++
Sbjct: 309 SDWDYFWDDEQQVPHIVK 326


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/37 (21%), Positives = 17/37 (45%)
 Frame = +1

Query: 433 VPQIIQSKITSSNPTNGLSFTGQSKTTHWVRDHRVHH 543
           + ++I SK+  S     +S         W++D + +H
Sbjct: 159 ITRVIDSKVVDSRKNTTVSIDVFPAVARWMQDPKTNH 195


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,781
Number of Sequences: 336
Number of extensions: 4719
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)