Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30623.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    53   4e-08
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   3.1  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   3.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.1  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   5.4  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.4  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   5.4  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   7.2  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   7.2  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   9.5  
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    25   9.5  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
 Frame = +2

Query: 371 FAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGFETIESITST 550
           FA + Y  + +G+TAG HRLWSH++YKA+ PL+  L    + A +     +         
Sbjct: 93  FAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHR 152

Query: 551 AIRT-QIPHNASRGLLLFSYRVGCSSENTLKLRRKETNRLSDLFDNPALMVQHRYSENIS 727
              T + P+N  +G            +N  ++ R +   +SDL  +P +M  HR+   I+
Sbjct: 153 YTDTDKDPYNVKKGFWYAHVGWMIILQNPRRIGRSD---VSDLNSDPFVMFNHRHFLPIA 209

Query: 728 SLLVWLW 748
           S + +++
Sbjct: 210 SFMAFIF 216



 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
 Frame = +1

Query: 517 WVRDHRVHHKYSDTDADST*RKP--WASFILI*GWLFVRKHPEVKKKGN**TFGFVR*SC 690
           W RDHR HH+Y+DTD D    K   W + +   GW+ + ++P           G    S 
Sbjct: 143 WSRDHRAHHRYTDTDKDPYNVKKGFWYAHV---GWMIILQNPR--------RIGRSDVSD 191

Query: 691 INGSAQVF--GKHFIPIG--LALDXPTIFPVIFWGELVG 795
           +N    V    +HF+PI   +A   P++F  + WG+  G
Sbjct: 192 LNSDPFVMFNHRHFLPIASFMAFIFPSLFCGLLWGDYRG 230


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 572 HNASRGLLLFSYRVGCSSENTLK-LRRKETNRLSDLFDNPALMVQHRYSENISSL 733
           H   R  +     VG +S  T++ L   E +R   L  NP L V+H  +E +S +
Sbjct: 353 HEMERAAVRLGELVGYASAGTIEYLYEPENDRFYFLELNPRLQVEHPTTEMVSGV 407


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 623 SENTLKLRRKETNRLSDLFDNPALMVQHRYSENISSLL 736
           S N  KL   E++RLS  ++NP L+ Q +      SLL
Sbjct: 564 SSNHEKLMESESDRLSKKWENPQLLAQLKSRFITGSLL 601


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 370 IRVPVLCSSNDWRYSWSSQTVVPQIIQSKITSSNPTNGLSFTGQSKTT 513
           I  P   SS+  + SW+S T +     SK+TSS  +  L+ T ++ TT
Sbjct: 604 ITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSST-SIPLTSTNRTSTT 650


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 615 PTLYENKRSPRLALCGICVRIAVLVMDSM 529
           P+LYE  + PR  +C +   I V + D++
Sbjct: 374 PSLYEQLKKPRYTVCFVVSCIFVSIFDTL 402


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 265 YEIVYKNIFIHIYLHVTMFYGLYLC 339
           YE+ YK IFI   L+  ++  LY+C
Sbjct: 66  YEVPYKWIFIIEMLYYELYLTLYVC 90


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 427 TVVPQIIQSKITSSNPTNGLSFTGQSKTTHWVRD 528
           TVV + +++  T SN T+ L     S T +WV D
Sbjct: 312 TVVYERLRASHTQSNSTSALPEEDASVTENWVHD 345


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 415 WSSQT-VVPQIIQSKITSSNPTNGLSFTGQSKTTHWVRDHRVHHKYSDTDA 564
           W   T  V + +  +I SS  TNGL    +SKT    ++  V + Y +++A
Sbjct: 352 WKESTRTVFETVPWRILSSQATNGLIELVRSKTRLTSKNKTVSNVYDESNA 402


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 487 SFTGQSKTTHWVRDHRVHHKYS 552
           SF  Q+++  W+ D R+H KY+
Sbjct: 16  SFEEQTESVSWIIDLRLHSKYA 37


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +1

Query: 280 KNIFIHIYLHVTMFYGLYLCCTTAKWXFSWIRVPVLCSSNDWRYSWSSQTVVPQIIQSKI 459
           K+IF+H+ + V++ +   L C    + F    V V+   N+ +Y+   + +    + S++
Sbjct: 214 KDIFLHLCIFVSVSFATVLACILEDYKF--YGVFVITFWNNLKYNSQIENLSQHGLHSRL 271

Query: 460 T 462
           T
Sbjct: 272 T 272


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 605 YRVGCSSENTLKLRRKETNRLSDLFDNPALMVQHRY 712
           YR   SS+  L+ +  E  R  D ++NP L     Y
Sbjct: 115 YRAIISSKRELRAQEMEAKRKQDSYNNPELKFWEDY 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,627,363
Number of Sequences: 5004
Number of extensions: 79058
Number of successful extensions: 220
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)