Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30623.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)               65   5e-11
SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_43587| Best HMM Match : DUF216 (HMM E-Value=3.9)                    29   4.4  
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
 Frame = +2

Query: 404 GVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGFETIESITSTAIRTQI-PHNA 580
           GVT GAHRLW+H+++KA+ PL++++M+  S+A Q     +     +      T   PHNA
Sbjct: 19  GVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKYSETDADPHNA 78

Query: 581 SRGLLLFSYRVGCSSENTLKLRRKETNRLSDLFDNPALMVQHRYSENISSLL 736
            RG            ++   +R+ +   LSDL+ +  +M Q R+ + IS L+
Sbjct: 79  KRGFFFSHVGWLMQRKHPDVIRKGKGIDLSDLYADSVVMFQRRHYKKISMLM 130


>SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -1

Query: 713 NTCAEPLMQDYRTNPKVY*FPFFLTSGCFLTNNQPYMRIKEAHGLRYVESASVSL 549
           N C E +    R  PK       + +GC+L  N  Y+ +    G+   E+ +VS+
Sbjct: 251 NYCTEEMKDPARDMPKAIIIGISIITGCYLMVNIAYITVLGGAGILASEAVAVSI 305


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 539  WTLWSRTQWVVFDWPVKERPLVGFEEVILLCMICGTTVCELQL 411
            W+LWSR+ W    WP    P   +   + L ++CG  +C L L
Sbjct: 1648 WSLWSRSMWPRSLWPRSLWPRSLWRWSLCL-VLCGLGLCCLGL 1689


>SB_43587| Best HMM Match : DUF216 (HMM E-Value=3.9)
          Length = 490

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +2

Query: 533 ESITSTAIRTQIPHNASRGLLLFSYRVGCSSENTLKLRRKETNRLSDLFDNPALMVQHRY 712
           E++++ ++ T    ++S  LL F  R+ C+S N  K +RK   R +         +Q  Y
Sbjct: 378 ENLSNISVSTSARKSSSCVLLPFRLRL-CTSVNEKKQKRKRERRSNKYQIAVGRQMQEHY 436

Query: 713 SENISSLLVW 742
            E    L  W
Sbjct: 437 EERYRCLNFW 446


>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1726

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 460  TSSNPTNGLSFTGQSKTTHWVRDHRVHHKYSDTDADST*RKPWASF 597
            TSS  T+GLS   +S      ++ +VH    D+D+D T  K    F
Sbjct: 923  TSSVETSGLSVDRKSNRMQGQKELKVHTASDDSDSDFTENKSLTPF 968


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,392,439
Number of Sequences: 59808
Number of extensions: 574227
Number of successful extensions: 1236
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)