Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30623.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15850.1 68416.m02005 fatty acid desaturase family protein si...    33   0.17 
At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to ...    32   0.38 
At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to ...    32   0.51 
At1g06120.1 68414.m00641 fatty acid desaturase family protein si...    31   0.89 
At1g06090.1 68414.m00638 fatty acid desaturase family protein si...    31   0.89 
At1g06350.1 68414.m00671 fatty acid desaturase family protein si...    31   1.2  
At1g06100.1 68414.m00639 fatty acid desaturase family protein si...    31   1.2  
At1g06360.1 68414.m00672 fatty acid desaturase family protein si...    30   1.5  
At3g15870.1 68416.m02007 fatty acid desaturase family protein si...    29   2.7  
At5g52920.1 68418.m06567 pyruvate kinase, putative similar to py...    28   6.2  
At5g66900.1 68418.m08433 disease resistance protein (CC-NBS-LRR ...    28   8.3  
At5g01890.1 68418.m00108 leucine-rich repeat transmembrane prote...    28   8.3  

>At3g15850.1 68416.m02005 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 371

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
 Frame = +2

Query: 362 SVGFAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGF-ETIES 538
           SV F  L  V   +G+T   HR  SHK++K    L+ L     + A Q  PI +  T   
Sbjct: 129 SVAFG-LYIVTGLLGITLSFHRNLSHKAFKLPKWLEYLFAYCGAQALQGNPIDWVSTHRY 187

Query: 539 ITSTAIRTQIPHNASRGLLLFSYRVGCSSENTLKLRRKETNRLSDLFDNP 688
                   + PH+   G   FS+       NT+  R  E N + DL   P
Sbjct: 188 HHQFCDSDRDPHSPLDG-FWFSHMNWMFDTNTITQRCGEPNNVGDLEKQP 236



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 499 QSKTTHWVRDHRVHHKYSDTDAD 567
           Q     WV  HR HH++ D+D D
Sbjct: 175 QGNPIDWVSTHRYHHQFCDSDRD 197


>At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to
           delta 9 acyl-lipid desaturase (ADS2) GI:2970036 from
           [Arabidopsis thaliana]
          Length = 307

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 377 YLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPI 517
           +L Y    +G+T   HR  +H+S+K    L+ LL     LA Q  PI
Sbjct: 70  FLFYTIGGLGITVSYHRNLAHRSFKVPKWLEYLLAYCALLAIQGDPI 116



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 499 QSKTTHWVRDHRVHHKYSDTDADST*RKP--WASFILI*GWLF 621
           Q     WV  HR HH+++D++ D    K   W S +L   W++
Sbjct: 112 QGDPIDWVSTHRYHHQFTDSERDPHSPKEGFWFSHLL---WIY 151


>At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to
           delta 9 acyl-lipid desaturase (ADS1) GB:BAA25180
           GI:2970034 from [Arabidopsis thaliana]
          Length = 305

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 499 QSKTTHWVRDHRVHHKYSDTDAD--ST*RKPWASFILI*GWLF 621
           Q     WV  HR HH+++D+D D  S     W S +L   WLF
Sbjct: 110 QGDPIDWVSTHRYHHQFTDSDRDPHSPNEGFWFSHLL---WLF 149



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 359 PSVGFAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPI 517
           P++  A + Y    +G+T   HR  +H+S+K    L+        LA Q  PI
Sbjct: 62  PALRVALIVYTVGGLGITVSYHRNLAHRSFKVPKWLEYFFAYCGLLAIQGDPI 114


>At1g06120.1 68414.m00641 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase GB:BAA25180
           GI:2970034 (ADS1) from [Arabidopsis thaliana]; supported
           by cDNA:gi_12083275_gb_AF332434.1_AF332434
          Length = 299

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 490 FTGQSKTTHWVRDHRVHHKYSDTDAD 567
           F  Q     WV  HR HH+++D+D D
Sbjct: 101 FALQGHPIDWVSTHRFHHQFTDSDRD 126


>At1g06090.1 68414.m00638 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase GB:BAA25180
           GI:2970034 (ADS1) from [Arabidopsis thaliana]
          Length = 299

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 490 FTGQSKTTHWVRDHRVHHKYSDTDAD 567
           F  Q     WV  HR HH+++D+D D
Sbjct: 101 FALQGHPIDWVSTHRFHHQFTDSDRD 126


>At1g06350.1 68414.m00671 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 300

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 490 FTGQSKTTHWVRDHRVHHKYSDTDADST*RKPWASFILI*GWLFVRKHPEVKKKG 654
           F  Q     WV  HR HH+++D+D D    K    F  I  W+F  ++ + K  G
Sbjct: 102 FALQGDPMDWVSIHRFHHQFTDSDRDPHSPKEGLLFSHI-LWIFDTQYIKYKCGG 155


>At1g06100.1 68414.m00639 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 299

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 499 QSKTTHWVRDHRVHHKYSDTDAD--ST*RKPWASFILI*GWLF 621
           Q     WV  HR HH+++D+D D  S     W S +L   W+F
Sbjct: 104 QGDPLDWVSIHRFHHQFTDSDRDPHSPIEGFWFSHVL---WIF 143


>At1g06360.1 68414.m00672 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 299

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 490 FTGQSKTTHWVRDHRVHHKYSDTDAD 567
           F  Q     WV  HR HH+++D+D D
Sbjct: 101 FALQGDPLDWVSIHRFHHQFTDSDRD 126


>At3g15870.1 68416.m02007 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 292

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 499 QSKTTHWVRDHRVHHKYSDTDAD 567
           Q     WV +HR HHK+ +T  D
Sbjct: 98  QGDPIEWVSNHRYHHKHCETQRD 120


>At5g52920.1 68418.m06567 pyruvate kinase, putative similar to
           pyruvate kinase isozyme G, chloroplast precursor
           [Nicotiana tabacum] SWISS-PROT:Q40546
          Length = 579

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 497 PVKERPLVGFEEVILLCMICGTTVCELQL*RQSLLLHNTGTRIQL 363
           P++E P++  EE+I LC   G  V       +S+++H T TR ++
Sbjct: 357 PIEEVPILQ-EEIINLCRSMGKAVIVATNMLESMIVHPTPTRAEV 400


>At5g66900.1 68418.m08433 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 593 LLFSYRVGCSSENTLKLRRKETNRLSDLFDNPALMVQH 706
           +L+ Y    +S+N LKL    TN   D F N  L+ QH
Sbjct: 447 ILYMYLEDLASQNLLKLVPLGTNEHEDGFYNDFLVTQH 484


>At5g01890.1 68418.m00108 leucine-rich repeat transmembrane protein
           kinase, putative leucine-rich receptor-like protein
           (LRPKm1) - Malus domestica, EMBL:AF053127
          Length = 967

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = +1

Query: 379 PVLCSSNDWRYSWSSQTVVPQIIQSKITSSNPTNGLSFTGQ 501
           P LC S   R   S  +V P+ I     SSNPTNG + TGQ
Sbjct: 563 PSLCGSVVNR---SCLSVHPKPIVLNPNSSNPTNGPALTGQ 600


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,588,630
Number of Sequences: 28952
Number of extensions: 403879
Number of successful extensions: 972
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)