Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30620.Seq
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   2.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.5  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 277 VHQTAIARNNPRKAVRS 327
           +HQT I  NNPR   R+
Sbjct: 46  IHQTVIYHNNPRDPNRA 62


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 194 KVSGTVKWFNVKSGYGFINRMTPRKM 271
           K++   K     S Y FIN +T RK+
Sbjct: 357 KLADLYKSLGPDSVYSFINNLTDRKL 382


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 194 KVSGTVKWFNVKSGYGFINRMTPRKM 271
           K++   K     S Y FIN +T RK+
Sbjct: 249 KLADLYKSLGPDSVYSFINNLTDRKL 274


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,259
Number of Sequences: 336
Number of extensions: 2463
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)