Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30618.Seq
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0849 - 8336065-8336736,8336812-8337051,8337143-8337205,833... 124 8e-29
01_06_1334 + 36389179-36389289,36389777-36389839,36389930-363901... 122 3e-28
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888... 121 8e-28
03_02_0105 - 5648436-5648536,5648650-5648692,5649152-5649244,564... 61 9e-10
07_01_0954 - 8016804-8016905,8017409-8017469,8017543-8017649,801... 36 0.049
01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552... 36 0.049
05_07_0248 - 28651807-28651908,28652001-28652061,28652164-286522... 31 1.1
09_02_0318 - 7191763-7191879,7192375-7192494,7192568-7192666,719... 31 1.4
08_02_0313 - 15659600-15659716,15660376-15660495,15660581-156606... 31 1.4
03_05_1043 - 29898829-29898930,29899174-29899234,29899638-298997... 31 1.4
09_02_0597 - 11078577-11078722,11078806-11079291,11079346-110793... 29 4.3
01_01_0815 + 6352634-6352910,6353005-6353220,6353355-6353506,635... 28 7.5
06_02_0105 - 11893666-11895483,11895661-11896422 28 9.9
>08_01_0849 -
8336065-8336736,8336812-8337051,8337143-8337205,
8337686-8337796
Length = 361
Score = 124 bits (299), Expect = 8e-29
Identities = 57/89 (64%), Positives = 72/89 (80%), Gaps = 2/89 (2%)
Frame = +3
Query: 510 VICEFPFKELARYHKNHGKEGTIVVTKVEEPSKYGVVVYDD-NGQIESFIEKPQEFISNK 686
VI E+PF EL ++HKNHG E TI+VTKV+EPSKYGVVV ++ G +E F+EKP+ F+ NK
Sbjct: 112 VISEYPFAELIKFHKNHGGEATIMVTKVDEPSKYGVVVMEEATGMVEKFVEKPKIFVGNK 171
Query: 687 INAGMYLLNPSVLSRIELRPMSLRRS-FP 770
INAG+YLLNPSVL RIEL+P S+ + FP
Sbjct: 172 INAGIYLLNPSVLDRIELKPTSIEKEVFP 200
Score = 98.3 bits (234), Expect = 6e-21
Identities = 48/79 (60%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 VEFANKPILMHQIEALVEAGVTQVILAVSYRAEEMEKELTEQVSKLGVSLTFSHETEPLG 435
V+FANKP+++HQIEAL E GVT+V+LA++YR E M L + KLG+++T S ETEPLG
Sbjct: 26 VDFANKPMILHQIEALKEVGVTEVVLAINYRPEVMLNFLKDFEDKLGITITCSQETEPLG 85
Query: 436 TAGPLALARE-LLSTSSEP 489
TAGPLALAR+ L+ S EP
Sbjct: 86 TAGPLALARDKLVDGSGEP 104
Score = 45.6 bits (103), Expect = 5e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +2
Query: 182 IRALILVGGYGTRLRPLTLSRPKP 253
++ALILVGG+GTRLRPLTLS PKP
Sbjct: 1 MKALILVGGFGTRLRPLTLSFPKP 24
>01_06_1334 +
36389179-36389289,36389777-36389839,36389930-36390169,
36390245-36390916
Length = 361
Score = 122 bits (294), Expect = 3e-28
Identities = 56/89 (62%), Positives = 72/89 (80%), Gaps = 2/89 (2%)
Frame = +3
Query: 510 VICEFPFKELARYHKNHGKEGTIVVTKVEEPSKYGVVVYDD-NGQIESFIEKPQEFISNK 686
VI E+PF EL ++HK+HG E TI+VTKV+EPSKYGVVV ++ G +E F+EKP+ F+ NK
Sbjct: 112 VISEYPFAELIKFHKSHGGEATIMVTKVDEPSKYGVVVMEEVTGMVEKFVEKPKIFVGNK 171
Query: 687 INAGMYLLNPSVLSRIELRPMSLRRS-FP 770
INAG+YLLNPSVL RIEL+P S+ + FP
Sbjct: 172 INAGIYLLNPSVLDRIELKPTSIEKEVFP 200
Score = 98.3 bits (234), Expect = 6e-21
Identities = 48/79 (60%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 VEFANKPILMHQIEALVEAGVTQVILAVSYRAEEMEKELTEQVSKLGVSLTFSHETEPLG 435
V+FANKP+++HQIEAL E GVT+V+LA++YR E M L + KLG+++T S ETEPLG
Sbjct: 26 VDFANKPMILHQIEALKEVGVTEVVLAINYRPEVMLNFLKDFEDKLGITITCSQETEPLG 85
Query: 436 TAGPLALARE-LLSTSSEP 489
TAGPLALAR+ L+ S EP
Sbjct: 86 TAGPLALARDKLVDGSGEP 104
Score = 45.6 bits (103), Expect = 5e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +2
Query: 182 IRALILVGGYGTRLRPLTLSRPKP 253
++ALILVGG+GTRLRPLTLS PKP
Sbjct: 1 MKALILVGGFGTRLRPLTLSFPKP 24
>03_02_0495 -
8879612-8880283,8880369-8880608,8880713-8880775,
8881510-8881620
Length = 361
Score = 121 bits (291), Expect = 8e-28
Identities = 56/89 (62%), Positives = 72/89 (80%), Gaps = 2/89 (2%)
Frame = +3
Query: 510 VICEFPFKELARYHKNHGKEGTIVVTKVEEPSKYGVVVYDDN-GQIESFIEKPQEFISNK 686
VI E+PF EL ++HK+HG E TI+VTKV+EPSKYGVVV +D ++E F+EKP+ F+ NK
Sbjct: 112 VISEYPFAELIQFHKSHGGEATIMVTKVDEPSKYGVVVMEDETDKVERFVEKPKVFVGNK 171
Query: 687 INAGMYLLNPSVLSRIELRPMSLRRS-FP 770
INAG+YLLNPSVL RIEL+P S+ + FP
Sbjct: 172 INAGIYLLNPSVLDRIELKPTSIEKEVFP 200
Score = 95.5 bits (227), Expect = 4e-20
Identities = 45/76 (59%), Positives = 59/76 (77%)
Frame = +1
Query: 256 VEFANKPILMHQIEALVEAGVTQVILAVSYRAEEMEKELTEQVSKLGVSLTFSHETEPLG 435
V+F NKP+++HQIEAL E GVT+V+LA++Y+ E M L + SKLG+ +T S ETEPLG
Sbjct: 26 VDFGNKPMILHQIEALKEVGVTEVVLAINYQPEVMLNFLKDFESKLGIKITCSQETEPLG 85
Query: 436 TAGPLALARELLSTSS 483
TAGPLALAR+ L+ S
Sbjct: 86 TAGPLALARDKLADGS 101
Score = 45.6 bits (103), Expect = 5e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +2
Query: 182 IRALILVGGYGTRLRPLTLSRPKP 253
++ALILVGG+GTRLRPLTLS PKP
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKP 24
>03_02_0105 -
5648436-5648536,5648650-5648692,5649152-5649244,
5649424-5649553,5649631-5649747,5650667-5650715,
5651139-5651229,5651381-5651473,5651565-5651611,
5651719-5651779,5651973-5652051,5652184-5652284,
5652409-5652476,5652593-5652650
Length = 376
Score = 61.3 bits (142), Expect = 9e-10
Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Frame = +3
Query: 507 CVICE-FPFKELARYHKNHGKEGTIVVTKV--EEPSKYGVVVYD-DNGQIESFIEKPQEF 674
C +C FP ++ HK +G GT++V KV E +++G +V D + ++ + EKP+ F
Sbjct: 110 CDVCSSFPLPDMLEAHKKYGGMGTLLVNKVSAESANQFGELVADPETNELLHYTEKPETF 169
Query: 675 ISNKINAGMYLLNPSVLSRIE 737
+S+ IN G+Y+ P++ + IE
Sbjct: 170 VSDLINCGVYIFTPNIFNAIE 190
Score = 31.5 bits (68), Expect = 0.80
Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Frame = +2
Query: 176 EEIRALILVGG--YGTRLRPLTLSRPKP 253
+ + A+I+VGG GTR RPL+L+ PKP
Sbjct: 6 QRVVAVIMVGGPTKGTRFRPLSLNVPKP 33
>07_01_0954 -
8016804-8016905,8017409-8017469,8017543-8017649,
8018278-8018382,8018460-8018546,8018631-8018711,
8018872-8018944,8019288-8019400,8019695-8019788,
8020060-8020115,8020212-8020295,8020384-8020476,
8020592-8020765,8020956-8021099,8021225-8021380
Length = 509
Score = 35.5 bits (78), Expect = 0.049
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +3
Query: 528 FKELARYHKNHGKEGTIVVTKVEEP--SKYGVVVYDDNGQIESFIEKPQE--FISNKINA 695
+ + + H + G + ++ V+E S +G++ D NG+I F+EKP++ S +++
Sbjct: 212 YMDFVQKHVDKGADISVACVPVDESRASDFGLMKTDKNGRITDFLEKPKDESLKSMQLDM 271
Query: 696 GMYLLNPSV 722
G + L P V
Sbjct: 272 GTFGLRPEV 280
Score = 31.9 bits (69), Expect = 0.61
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +2
Query: 176 EEIRALILVGGYGTRLRPLTLSRPKP 253
+ + ++IL GG GTRL PLT +R KP
Sbjct: 74 DTVASIILGGGAGTRLFPLTRTRAKP 99
>01_05_0801 +
25353708-25353914,25354307-25354429,25355035-25355205,
25355303-25355392,25355497-25355583,25355664-25355719,
25355812-25355905,25356032-25356144,25356211-25356283,
25356603-25356683,25356865-25356951,25357031-25357135,
25357279-25357385,25357481-25357541,25357931-25358158,
25359720-25360677,25360816-25360997,25361237-25361326,
25361422-25361709,25361844-25362056,25362560-25362784
Length = 1212
Score = 35.5 bits (78), Expect = 0.049
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +3
Query: 528 FKELARYHKNHGKEGTIVVTKVE--EPSKYGVVVYDDNGQIESFIEKPQ 668
+ EL + H + + TI ++ S YG+V +DD+G++ F+EKP+
Sbjct: 221 YMELVQKHVDDNADITISCAPIDGSRASDYGLVKFDDSGRVIQFLEKPE 269
>05_07_0248 -
28651807-28651908,28652001-28652061,28652164-28652270,
28652369-28652473,28652556-28652642,28652814-28652894,
28653083-28653155,28653243-28653355,28653439-28653532,
28653633-28653688,28653779-28653865,28653975-28654064,
28654178-28654348,28654752-28654871,28654981-28655193
Length = 519
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 528 FKELARYHKNHGKEGTIVVTKVEEP--SKYGVVVYDDNGQIESFIEKPQ 668
+ EL + H + + T+ V E S YG+V +D +G++ F EKP+
Sbjct: 222 YMELVQKHVDDNADITLSCAPVGESRASDYGLVKFDSSGRVIQFSEKPK 270
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 179 EIRALILVGGYGTRLRPLTLSRPKP 253
E+ A+IL GG GT+L PLT +R P
Sbjct: 86 EVAAVILGGGTGTQLFPLTSTRATP 110
>09_02_0318 -
7191763-7191879,7192375-7192494,7192568-7192666,
7192846-7192957,7193058-7193161,7193341-7193520,
7193611-7193880,7194364-7194660,7195283-7195477
Length = 497
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 182 IRALILVGGYGTRLRPLTLSRPKP 253
+ +IL GG GTRL PLT R KP
Sbjct: 67 VLGIILGGGAGTRLYPLTKKRAKP 90
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 528 FKELARYHKNHGKEGTIVVTKVEEP--SKYGVVVYDDNGQIESFIEKPQ 668
+++ + H+ + T+ ++E + +G++ DD G+I F EKP+
Sbjct: 198 YQKFIQAHRETNADITVAALPMDEERATAFGLMKIDDEGRIIEFAEKPK 246
>08_02_0313 -
15659600-15659716,15660376-15660495,15660581-15660679,
15660802-15660913,15661025-15661128,15661316-15661495,
15661612-15661881,15662529-15662825,15663432-15663677
Length = 514
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 182 IRALILVGGYGTRLRPLTLSRPKP 253
+ +IL GG GTRL PLT R KP
Sbjct: 84 VLGIILGGGAGTRLYPLTKKRAKP 107
>03_05_1043 -
29898829-29898930,29899174-29899234,29899638-29899744,
29899839-29899943,29900184-29900270,29900553-29900633,
29900834-29900906,29901120-29901232,29901781-29901874,
29902032-29902087,29902171-29902254,29902550-29902642,
29902751-29902924,29903033-29903146,29903404-29903490
Length = 476
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +2
Query: 188 ALILVGGYGTRLRPLTLSRPKP 253
A+IL GG GTRL PLT R KP
Sbjct: 45 AVILGGGAGTRLFPLTKRRAKP 66
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 528 FKELARYHKNHGKEGTIVVTKVEEP--SKYGVVVYDDNGQIESFIEKPQ 668
+ + + H+ G + +I +++ S +G++ DD G++ +F EKP+
Sbjct: 179 YMDFVQSHRQRGADISICCLPIDDSRASDFGLMKIDDTGRVIAFSEKPK 227
>09_02_0597 -
11078577-11078722,11078806-11079291,11079346-11079374,
11079773-11080343,11080802-11080814
Length = 414
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 165 SVPHILN*YWIYSTLIERFPVQLMQKF 85
S+P ILN Y +YS +I +P+ Q F
Sbjct: 341 SLPPILNAYEVYSRIIHEYPMTFSQDF 367
>01_01_0815 +
6352634-6352910,6353005-6353220,6353355-6353506,
6355713-6355989,6356064-6356090,6356736-6356998
Length = 403
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 516 CEFPFKELARYHKNHGKEGTIVVTKVEEPSKYGVVVYDDNGQIESFIEKPQEF 674
C + F ELARYH N + + + + PS +V D + F++KP +F
Sbjct: 257 CLWRFNELARYH-NAALLAAVSLLRRKYPSA-TIVFADYYDPVIEFMQKPDDF 307
>06_02_0105 - 11893666-11895483,11895661-11896422
Length = 859
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 292 IEALVEAGVTQVILAVSYRAEEMEKELTEQVSKLGVSLTFSHET 423
IE + G Q+ +++S A +ELT ++++L V L +H T
Sbjct: 377 IERDISIGKAQLAVSMSEGAVRKVEELTVELNRLKVELELAHST 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,368,551
Number of Sequences: 37544
Number of extensions: 364445
Number of successful extensions: 828
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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