Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30614.Seq
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          119   2e-27
11_01_0155 - 1287003-1287452                                          119   2e-27
07_03_0227 - 15398371-15398925                                         30   1.0  
11_06_0598 - 25391923-25393197                                         28   5.5  
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849...    28   5.5  
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986...    28   5.5  
03_06_0097 - 31632238-31632525,31633386-31633769                       27   7.2  
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533...    27   7.2  
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365...    27   9.6  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  119 bits (286), Expect = 2e-27
 Identities = 55/74 (74%), Positives = 63/74 (85%)
 Frame = +2

Query: 224 QGWWSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 403
           +G    S    IRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKF
Sbjct: 76  RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135

Query: 404 GGPGARARYQKSYR 445
           GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149



 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 40/79 (50%), Positives = 57/79 (72%)
 Frame = +3

Query: 18  REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 197
           R P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 198 SMVXIRVTVKGGGHVAQVY 254
             + +R+ V+GGG  +Q+Y
Sbjct: 67  KDIDMRIRVRGGGKTSQIY 85


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  119 bits (286), Expect = 2e-27
 Identities = 55/74 (74%), Positives = 63/74 (85%)
 Frame = +2

Query: 224 QGWWSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 403
           +G    S    IRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKF
Sbjct: 76  RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135

Query: 404 GGPGARARYQKSYR 445
           GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149



 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 40/79 (50%), Positives = 57/79 (72%)
 Frame = +3

Query: 18  REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 197
           R P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 198 SMVXIRVTVKGGGHVAQVY 254
             + +R+ V+GGG  +Q+Y
Sbjct: 67  KDIDMRIRVRGGGKTSQIY 85


>07_03_0227 - 15398371-15398925
          Length = 184

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -3

Query: 168 VPEVCTAAVWAQPSPMGARLHAAFH--DHACNTQLRWRF 58
           +P +C A  W  P+   A  H  FH     C+ + RW +
Sbjct: 23  LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61


>11_06_0598 - 25391923-25393197
          Length = 424

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -3

Query: 426 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 274
           LA    PP  L S      TS L  + T +  ++    S+TY    AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304


>08_02_0526 +
           18184146-18184168,18184247-18184438,18184846-18184954,
           18185071-18185220,18185973-18186136,18186273-18186359,
           18187083-18187137,18187911-18188333
          Length = 400

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 10  RQDVSPSRPSKYSDVRKPPPQLRIAS 87
           R+  S S P K SD R PPP+ R  S
Sbjct: 33  RRSTSRSPPPKKSDSRSPPPRRRSTS 58


>04_04_1154 -
           31297628-31298020,31298150-31298300,31298389-31298620,
           31298700-31298910,31299137-31299255,31299341-31299415,
           31299991-31300189,31300258-31300664,31300775-31300839,
           31300967-31301011,31301449-31301520,31301597-31301671,
           31301912-31301983,31302178-31302249,31302525-31302596,
           31302880-31302951,31303056-31303127,31304064-31304135,
           31304375-31304561,31304686-31304815
          Length = 930

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 111 NGRPLDLVEPRLLQYKLQEPILLL 182
           NG PLD V+P+L ++  +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830


>03_06_0097 - 31632238-31632525,31633386-31633769
          Length = 223

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +3

Query: 30  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 200
           Q +   GR+KTA A    + G G + +N R         P  ++Y  + P++ LG E  +
Sbjct: 96  QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152

Query: 201 MVXIRVTVKGGG 236
              + V V GGG
Sbjct: 153 SYDVFVKVHGGG 164


>01_05_0500 +
           22752190-22752329,22752957-22753032,22753292-22753351,
           22754718-22754882,22756299-22756358
          Length = 166

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 122 WAPVYTQHSMTTLAIRNCGGGFLTSEYLD 36
           W  V T H +T +A R+C G F   ++LD
Sbjct: 18  WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45


>11_04_0272 -
           15631598-15631898,15633162-15633291,15636394-15636544,
           15636632-15636730,15636912-15637063,15637079-15637301
          Length = 351

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
 Frame = +2

Query: 212 QSDSQGWWSC-STSLPIRQAISKALI--AFYQKYVDEASKKEIKDI--LVQYDRSLLVAD 376
           QS +  WW     S   R +I+  L   AFY+KY  E+ K+  K+   L Q +  +  + 
Sbjct: 24  QSSAFEWWDAHKKSYSERISITWELFKEAFYKKYFPESVKRMKKEFLELKQVEYEIEFSR 83

Query: 377 PRRCEPKKFGGPGARA-RYQKSYR*AFKKTI 466
             R  P+     G++A R++   R   K+ +
Sbjct: 84  LARFAPEFVQTDGSKARRFESGLRQPLKRRV 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,985,480
Number of Sequences: 37544
Number of extensions: 361828
Number of successful extensions: 957
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)