Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30612.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    74   2e-14
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    28   1.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    26   4.5  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   4.5  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   6.0  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   6.0  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   7.9  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 28/60 (46%), Positives = 45/60 (75%)
 Frame = +1

Query: 517 WVRDHRVHHKYSDTDADPHNASRGFFYSHIGWLFVRKHPEVKKTGKLIDLSDLFDNPALM 696
           W RDHR HH+Y+DTD DP+N  +GF+Y+H+GW+ + ++P  ++ G+  D+SDL  +P +M
Sbjct: 143 WSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGWMIILQNP--RRIGR-SDVSDLNSDPFVM 199



 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 19/36 (52%), Positives = 27/36 (75%)
 Frame = +2

Query: 371 FAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILL 478
           FA + Y  + +G+TAG HRLWSH++YKA+ PL+  L
Sbjct: 93  FAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFL 128


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +2

Query: 377 YLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPIGFETIESITSTAI 556
           +LCY      +     +  +   + ++L   ++ +VFLSL N  P I F  + S  S A+
Sbjct: 582 FLCYDILVETILPAGSQTLTDSVFSSKLYKLVIFVVFLSLVNSGPFI-FRAL-SKKSLAV 639

Query: 557 RTQIHIT 577
            T + IT
Sbjct: 640 LTMLWIT 646


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 370 IRVPVLCSSNDWRYSWSSQTVVPQIIQSKITSSNPTNGLSFTGQSKTT 513
           I  P   SS+  + SW+S T +     SK+TSS  +  L+ T ++ TT
Sbjct: 604 ITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSST-SIPLTSTNRTSTT 650


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 265 YEIVYKNIFIHIYLHVTMFYGLYLC 339
           YE+ YK IFI   L+  ++  LY+C
Sbjct: 66  YEVPYKWIFIIEMLYYELYLTLYVC 90


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 427 TVVPQIIQSKITSSNPTNGLSFTGQSKTTHWVRD 528
           TVV + +++  T SN T+ L     S T +WV D
Sbjct: 312 TVVYERLRASHTQSNSTSALPEEDASVTENWVHD 345


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 415 WSSQT-VVPQIIQSKITSSNPTNGLSFTGQSKTTHWVRDHRVHHKYSDTDA 564
           W   T  V + +  +I SS  TNGL    +SKT    ++  V + Y +++A
Sbjct: 352 WKESTRTVFETVPWRILSSQATNGLIELVRSKTRLTSKNKTVSNVYDESNA 402


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 487 SFTGQSKTTHWVRDHRVHHKYS 552
           SF  Q+++  W+ D R+H KY+
Sbjct: 16  SFEEQTESVSWIIDLRLHSKYA 37


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +1

Query: 280 KNIFIHIYLHVTMFYGLYLCCTTAKWXFSWIRVPVLCSSNDWRYSWSSQTVVPQIIQSKI 459
           K+IF+H+ + V++ +   L C    + F    V V+   N+ +Y+   + +    + S++
Sbjct: 214 KDIFLHLCIFVSVSFATVLACILEDYKF--YGVFVITFWNNLKYNSQIENLSQHGLHSRL 271

Query: 460 T 462
           T
Sbjct: 272 T 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,714
Number of Sequences: 5004
Number of extensions: 65040
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)