Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30612.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171...    32   0.50 
03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337           31   0.88 
05_05_0021 + 21574563-21574650,21575094-21575220,21575254-215753...    30   2.0  
03_05_0821 - 27960414-27961253                                         29   4.7  
02_01_0410 + 2996779-2997888                                           29   4.7  

>01_06_1249 -
           35714645-35716003,35716700-35716761,35717007-35717181,
           35717276-35717301,35717917-35717983,35719803-35719945,
           35720337-35720349
          Length = 614

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 539 WTLWSRTQWVVFDWPVKERPLVGFEEV 459
           WTLW+ +Q VV  W +K RP     E+
Sbjct: 147 WTLWTHSQLVVVGWLLKRRPPTKLSEL 173


>03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337
          Length = 386

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 326 AYIFVVRQRSGPSVGFAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLM 481
           AY + V   +  S+ F Y+ +V  TIG+      L+++       PL++LLM
Sbjct: 200 AYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEALMLFPLEMLLM 251


>05_05_0021 +
           21574563-21574650,21575094-21575220,21575254-21575372,
           21575687-21575769,21575902-21576129,21576697-21576744,
           21576831-21576890,21576978-21577116,21577303-21577574,
           21577683-21577922,21577983-21577991
          Length = 470

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 25/103 (24%), Positives = 42/103 (40%)
 Frame = +1

Query: 355 WXFSWIRVPVLCSSNDWRYSWSSQTVVPQIIQSKITSSNPTNGLSFTGQSKTTHWVRDHR 534
           W  S ++ P   +S     +  S +    + Q+++ S  P +  S +GQ +    V    
Sbjct: 129 WPMSHLQEPYSQNSQSVGSTTDSSSAQNTMSQAELVS--PASMRSDSGQEQQQQEVLMVT 186

Query: 535 VHHKYSDTDADPHNASRGFFYSHIGWLFVRKHPEVKKTGKLID 663
           +             A+   F  H G L +RKH   +K GKL+D
Sbjct: 187 IDDYNYKQGLGAAIATAPSFQQHAGGLDMRKHGSTRKDGKLLD 229


>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 304 LHVTMFYGLYLCCTTA-KWXFSWIRVPVLCSSNDWRYSWSSQTVV 435
           +HV M YG YLCC+   +W   W R         + +S+++  V+
Sbjct: 182 VHVAM-YGYYLCCSLGLRWPPRWKRAVTELQIAQFLFSFAASAVM 225


>02_01_0410 + 2996779-2997888
          Length = 369

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 326 AYIFVVRQRSGPSVGFAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILL 478
           AY + V   +  S+ F Y+ +V  TIG+      L+++       PL++LL
Sbjct: 183 AYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAFMLFPLEMLL 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,883,692
Number of Sequences: 37544
Number of extensions: 392028
Number of successful extensions: 919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)