Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30612.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)              106   2e-23
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_5572| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_37799| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_14824| Best HMM Match : F5_F8_type_C (HMM E-Value=1.5e-17)          28   8.4  
SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)                     28   8.4  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score =  106 bits (254), Expect = 2e-23
 Identities = 44/70 (62%), Positives = 53/70 (75%)
 Frame = +1

Query: 487 SFTGQSKTTHWVRDHRVHHKYSDTDADPHNASRGFFYSHIGWLFVRKHPEVKKTGKLIDL 666
           S   Q+    W RDHRVHHKYS+TDADPHNA RGFF+SH+GWL  RKHP+V + GK IDL
Sbjct: 48  SMAAQNDIFEWSRDHRVHHKYSETDADPHNAKRGFFFSHVGWLMQRKHPDVIRKGKGIDL 107

Query: 667 SDLFDNPALM 696
           SDL+ +  +M
Sbjct: 108 SDLYADSVVM 117



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 18/34 (52%), Positives = 29/34 (85%)
 Frame = +2

Query: 404 GVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQ 505
           GVT GAHRLW+H+++KA+ PL++++M+  S+A Q
Sbjct: 19  GVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQ 52


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 539  WTLWSRTQWVVFDWPVKERPLVGFEEVILLCMICGTTVCELQL 411
            W+LWSR+ W    WP    P   +   + L ++CG  +C L L
Sbjct: 1648 WSLWSRSMWPRSLWPRSLWPRSLWRWSLCL-VLCGLGLCCLGL 1689


>SB_5572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +2

Query: 461 PLQILLMVFLSLANQRPPIGFETIESITSTAIRTQIHITQAVASFILI*VGCSSENTLKL 640
           PL+++L   LS  N   P+G   I    + AI   I I  A+A  I I +  ++  T+ +
Sbjct: 58  PLRVILKPLLSDYNDYNPVGGVAIAIAIAIAIAIAIAIAIAIAIAIAIAIAIANSITISI 117


>SB_37799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 606 YMRIKEATACVMWICVRIAVLVMDS 532
           Y R+++A  CV   CVR  VL  DS
Sbjct: 30  YFRLEDAKRCVQPACVRHGVLTRDS 54


>SB_14824| Best HMM Match : F5_F8_type_C (HMM E-Value=1.5e-17)
          Length = 409

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 412 SWSSQTVVPQIIQSKITSSNPTNGLSFTGQSKTTHWVRDHRVHHKYSD 555
           SW S T     +Q  + S     G++  G     +WV+ ++V H + +
Sbjct: 39  SWCSVTSSSGYLQVDLGSRKTVTGIATHGDHTRDNWVKKYKVLHSHDN 86


>SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)
          Length = 2232

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -1

Query: 524 RTQWVVFDW---PVKERPLVGFEEVILLCMIC 438
           RT+W++FD+   P++ +  V F  V  +C +C
Sbjct: 484 RTRWIIFDFEAMPLESKHTVNFAGVQKVCDVC 515


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,412,941
Number of Sequences: 59808
Number of extensions: 471520
Number of successful extensions: 951
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)