Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30612.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to ... 59 3e-09
At3g15870.1 68416.m02007 fatty acid desaturase family protein si... 56 3e-08
At1g06120.1 68414.m00641 fatty acid desaturase family protein si... 56 3e-08
At1g06090.1 68414.m00638 fatty acid desaturase family protein si... 56 3e-08
At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to ... 55 5e-08
At3g15850.1 68416.m02005 fatty acid desaturase family protein si... 54 9e-08
At1g06350.1 68414.m00671 fatty acid desaturase family protein si... 54 9e-08
At1g06100.1 68414.m00639 fatty acid desaturase family protein si... 54 9e-08
At1g06360.1 68414.m00672 fatty acid desaturase family protein si... 54 1e-07
At1g61270.1 68414.m06905 lysine and histidine specific transport... 29 3.9
At5g52920.1 68418.m06567 pyruvate kinase, putative similar to py... 28 5.2
At5g01890.1 68418.m00108 leucine-rich repeat transmembrane prote... 28 6.8
At3g48360.1 68416.m05278 speckle-type POZ protein-related conta... 27 9.0
>At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to
delta 9 acyl-lipid desaturase (ADS1) GB:BAA25180
GI:2970034 from [Arabidopsis thaliana]
Length = 305
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/59 (40%), Positives = 38/59 (64%)
Frame = +1
Query: 499 QSKTTHWVRDHRVHHKYSDTDADPHNASRGFFYSHIGWLFVRKHPEVKKTGKLIDLSDL 675
Q WV HR HH+++D+D DPH+ + GF++SH+ WLF + V+K G+ ++ DL
Sbjct: 110 QGDPIDWVSTHRYHHQFTDSDRDPHSPNEGFWFSHLLWLFDTGY-LVEKCGRRTNVEDL 167
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 359 PSVGFAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPI 517
P++ A + Y +G+T HR +H+S+K L+ LA Q PI
Sbjct: 62 PALRVALIVYTVGGLGITVSYHRNLAHRSFKVPKWLEYFFAYCGLLAIQGDPI 114
>At3g15870.1 68416.m02007 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 292
Score = 55.6 bits (128), Expect = 3e-08
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +1
Query: 499 QSKTTHWVRDHRVHHKYSDTDADPHNASRGFFYSHIGWLF 618
Q WV +HR HHK+ +T DPH+ ++GF++SH+ W+F
Sbjct: 98 QGDPIEWVSNHRYHHKHCETQRDPHSPTQGFWFSHMAWIF 137
>At1g06120.1 68414.m00641 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]; supported
by cDNA:gi_12083275_gb_AF332434.1_AF332434
Length = 299
Score = 55.6 bits (128), Expect = 3e-08
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1
Query: 490 FTGQSKTTHWVRDHRVHHKYSDTDADPHNASRGFFYSHIGWLFVRKHPEVKKTGK 654
F Q WV HR HH+++D+D DPH+ GF++SH+ W+F + K G+
Sbjct: 101 FALQGHPIDWVSTHRFHHQFTDSDRDPHSPIEGFWFSHVFWIFDTSYIREKCGGR 155
>At1g06090.1 68414.m00638 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]
Length = 299
Score = 55.6 bits (128), Expect = 3e-08
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1
Query: 490 FTGQSKTTHWVRDHRVHHKYSDTDADPHNASRGFFYSHIGWLFVRKHPEVKKTGK 654
F Q WV HR HH+++D+D DPH+ GF++SH+ W+F + K G+
Sbjct: 101 FALQGHPIDWVSTHRFHHQFTDSDRDPHSPIEGFWFSHVFWIFDTSYIREKCGGR 155
>At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to
delta 9 acyl-lipid desaturase (ADS2) GI:2970036 from
[Arabidopsis thaliana]
Length = 307
Score = 54.8 bits (126), Expect = 5e-08
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +1
Query: 499 QSKTTHWVRDHRVHHKYSDTDADPHNASRGFFYSHIGWLFVRKHPEVKKTGKLIDLSDL 675
Q WV HR HH+++D++ DPH+ GF++SH+ W++ + V K G+ ++ DL
Sbjct: 112 QGDPIDWVSTHRYHHQFTDSERDPHSPKEGFWFSHLLWIYDSAY-LVSKCGRRANVEDL 169
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 377 YLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPI 517
+L Y +G+T HR +H+S+K L+ LL LA Q PI
Sbjct: 70 FLFYTIGGLGITVSYHRNLAHRSFKVPKWLEYLLAYCALLAIQGDPI 116
>At3g15850.1 68416.m02005 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 371
Score = 54.0 bits (124), Expect = 9e-08
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +1
Query: 499 QSKTTHWVRDHRVHHKYSDTDADPHNASRGFFYSHIGWLFVRKHPEVKKTGKLIDLSDLF 678
Q WV HR HH++ D+D DPH+ GF++SH+ W+F + ++ G+ ++ DL
Sbjct: 175 QGNPIDWVSTHRYHHQFCDSDRDPHSPLDGFWFSHMNWMF-DTNTITQRCGEPNNVGDLE 233
Query: 679 DNP 687
P
Sbjct: 234 KQP 236
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2
Query: 362 SVGFAYLCYVAATIGVTAGAHRLWSHKSYKARLPLQILLMVFLSLANQRPPI 517
SV F L V +G+T HR SHK++K L+ L + A Q PI
Sbjct: 129 SVAFG-LYIVTGLLGITLSFHRNLSHKAFKLPKWLEYLFAYCGAQALQGNPI 179
>At1g06350.1 68414.m00671 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 300
Score = 54.0 bits (124), Expect = 9e-08
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1
Query: 490 FTGQSKTTHWVRDHRVHHKYSDTDADPHNASRGFFYSHIGWLFVRKHPEVKKTGK 654
F Q WV HR HH+++D+D DPH+ G +SHI W+F ++ + K G+
Sbjct: 102 FALQGDPMDWVSIHRFHHQFTDSDRDPHSPKEGLLFSHILWIFDTQYIKYKCGGR 156
>At1g06100.1 68414.m00639 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 54.0 bits (124), Expect = 9e-08
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = +1
Query: 499 QSKTTHWVRDHRVHHKYSDTDADPHNASRGFFYSHIGWLFVRKHPEVKKTGKLIDLSDL 675
Q WV HR HH+++D+D DPH+ GF++SH+ W+F + +K G+ ++ DL
Sbjct: 104 QGDPLDWVSIHRFHHQFTDSDRDPHSPIEGFWFSHVLWIFDTDYIR-EKCGRRNNVMDL 161
>At1g06360.1 68414.m00672 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 53.6 bits (123), Expect = 1e-07
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +1
Query: 490 FTGQSKTTHWVRDHRVHHKYSDTDADPHNASRGFFYSHIGWLFVRKHPEVKKTGK 654
F Q WV HR HH+++D+D DPH+ GF++SH+ W+ ++ + K G+
Sbjct: 101 FALQGDPLDWVSIHRFHHQFTDSDRDPHSPIEGFWFSHVWWICDTRYIKYKCGGR 155
>At1g61270.1 68414.m06905 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter GI:2576361 from [Arabidopsis thaliana];
contains Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 451
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 579 CVMWICVRIAVLVMDSMVSNPMGGL 505
C+ WIC+ + VLV M+ P+GGL
Sbjct: 413 CINWICIILGVLV---MIIAPIGGL 434
>At5g52920.1 68418.m06567 pyruvate kinase, putative similar to
pyruvate kinase isozyme G, chloroplast precursor
[Nicotiana tabacum] SWISS-PROT:Q40546
Length = 579
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -1
Query: 497 PVKERPLVGFEEVILLCMICGTTVCELQL*RQSLLLHNTGTRIQL 363
P++E P++ EE+I LC G V +S+++H T TR ++
Sbjct: 357 PIEEVPILQ-EEIINLCRSMGKAVIVATNMLESMIVHPTPTRAEV 400
>At5g01890.1 68418.m00108 leucine-rich repeat transmembrane protein
kinase, putative leucine-rich receptor-like protein
(LRPKm1) - Malus domestica, EMBL:AF053127
Length = 967
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +1
Query: 379 PVLCSSNDWRYSWSSQTVVPQIIQSKITSSNPTNGLSFTGQ 501
P LC S R S +V P+ I SSNPTNG + TGQ
Sbjct: 563 PSLCGSVVNR---SCLSVHPKPIVLNPNSSNPTNGPALTGQ 600
>At3g48360.1 68416.m05278 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; similar to Speckle-type
POZ protein (SP:O43791) [Homo sapiens]
Length = 364
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 618 EQPTYMRIKEATACVMWICVRIAVLVMDSMV 526
EQ YM++ EA C+ IC + LV S V
Sbjct: 213 EQDLYMQLSEAMECIEHICTQGCTLVGPSNV 243
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,669,846
Number of Sequences: 28952
Number of extensions: 330836
Number of successful extensions: 850
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -