Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30610.Seq
(539 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 129 7e-30
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 129 7e-30
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 129 7e-30
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 129 7e-30
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 129 7e-30
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 76 9e-14
BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for IM... 30 6.0
AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein. 30 6.0
AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein. 30 6.0
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 129 bits (311), Expect = 7e-30
Identities = 56/79 (70%), Positives = 71/79 (89%)
Frame = +3
Query: 18 RXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKF 197
+ P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++ PR LQYKL EP+LLLGKE+F
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 198 SMVXIRXTVKGGGHVAQVY 254
+ V IR VKGGGHVAQ+Y
Sbjct: 64 AGVDIRVRVKGGGHVAQIY 82
Score = 125 bits (302), Expect = 9e-29
Identities = 57/63 (90%), Positives = 62/63 (98%)
Frame = +2
Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
IRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQK
Sbjct: 84 IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143
Query: 437 SYR 445
SYR
Sbjct: 144 SYR 146
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 129 bits (311), Expect = 7e-30
Identities = 56/79 (70%), Positives = 71/79 (89%)
Frame = +3
Query: 18 RXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKF 197
+ P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++ PR LQYKL EP+LLLGKE+F
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 198 SMVXIRXTVKGGGHVAQVY 254
+ V IR VKGGGHVAQ+Y
Sbjct: 64 AGVDIRVRVKGGGHVAQIY 82
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 129 bits (311), Expect = 7e-30
Identities = 56/79 (70%), Positives = 71/79 (89%)
Frame = +3
Query: 18 RXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKF 197
+ P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++ PR LQYKL EP+LLLGKE+F
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 198 SMVXIRXTVKGGGHVAQVY 254
+ V IR VKGGGHVAQ+Y
Sbjct: 64 AGVDIRVRVKGGGHVAQIY 82
Score = 125 bits (302), Expect = 9e-29
Identities = 57/63 (90%), Positives = 62/63 (98%)
Frame = +2
Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
IRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQK
Sbjct: 84 IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143
Query: 437 SYR 445
SYR
Sbjct: 144 SYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 129 bits (311), Expect = 7e-30
Identities = 56/79 (70%), Positives = 71/79 (89%)
Frame = +3
Query: 18 RXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKF 197
+ P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++ PR LQYKL EP+LLLGKE+F
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 198 SMVXIRXTVKGGGHVAQVY 254
+ V IR VKGGGHVAQ+Y
Sbjct: 64 AGVDIRVRVKGGGHVAQIY 82
Score = 125 bits (302), Expect = 9e-29
Identities = 57/63 (90%), Positives = 62/63 (98%)
Frame = +2
Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
IRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQK
Sbjct: 84 IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143
Query: 437 SYR 445
SYR
Sbjct: 144 SYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 129 bits (311), Expect = 7e-30
Identities = 56/79 (70%), Positives = 71/79 (89%)
Frame = +3
Query: 18 RXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKF 197
+ P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++ PR LQYKL EP+LLLGKE+F
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 198 SMVXIRXTVKGGGHVAQVY 254
+ V IR VKGGGHVAQ+Y
Sbjct: 64 AGVDIRVRVKGGGHVAQIY 82
Score = 125 bits (302), Expect = 9e-29
Identities = 57/63 (90%), Positives = 62/63 (98%)
Frame = +2
Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
IRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQK
Sbjct: 84 IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143
Query: 437 SYR 445
SYR
Sbjct: 144 SYR 146
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 75.8 bits (178), Expect = 9e-14
Identities = 47/145 (32%), Positives = 66/145 (45%)
Frame = +3
Query: 27 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMV 206
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 207 XIRXTVKGGGHVAQVYLSDKLFQRL*SPSTRNM*TKPQRRKSKTS*YNTIGVCWWLTXXX 386
I VKG GHV Q+Y + + P + T CWW T
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEASEEIKDT----LTRPCWWFTPVA 133
Query: 387 XXXXXXXXXXXXXDTRNLTVKPSRK 461
TRN + KP +K
Sbjct: 134 MNPRNLQALVPVLTTRNHSSKPIKK 158
Score = 36.3 bits (80), Expect = 0.069
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +2
Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQ 349
+ Q ISKAL+ Y KYVDEAS +EIKD L +
Sbjct: 95 VLQYISKALVPCYPKYVDEAS-EEIKDTLTR 124
>BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for
IMAGE:6451327) protein.
Length = 204
Score = 29.9 bits (64), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 314 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 397
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein.
Length = 689
Score = 29.9 bits (64), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 314 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 397
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein.
Length = 198
Score = 29.9 bits (64), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 314 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 397
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,393,687
Number of Sequences: 237096
Number of extensions: 1875741
Number of successful extensions: 3777
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3777
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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