Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30608.Seq
(511 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 116 8e-27
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 33 0.091
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 33 0.091
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 33 0.091
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 30 0.85
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 25 1.8
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 29 2.0
AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical ... 29 2.0
AC006769-14|AAF60579.1| 378|Caenorhabditis elegans Hypothetical... 29 2.0
Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical pr... 28 3.4
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 3.4
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z78060-2|CAB01490.1| 114|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 27 6.0
U97194-9|AAB52452.1| 336|Caenorhabditis elegans Hypothetical pr... 27 6.0
U00065-10|AAA50733.2| 382|Caenorhabditis elegans Hypothetical p... 27 7.9
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 27 7.9
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 27 7.9
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 116 bits (280), Expect = 8e-27
Identities = 54/80 (67%), Positives = 62/80 (77%)
Frame = +3
Query: 15 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 194
MTNSKG R GTR +FAR FR HG LSTY YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1 MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60
Query: 195 TGRVYNVTAHALGVIVNKRV 254
TGR++NVT A+G+IVNKRV
Sbjct: 61 TGRIFNVTRGAVGIIVNKRV 80
Score = 89.4 bits (212), Expect = 1e-18
Identities = 44/80 (55%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Frame = +2
Query: 257 GRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV-NLKRQPAPPKAAH- 430
G I+PKRINIR+EH+K SKCR DFL RVK N+ K AK+AG+ V LKR P P+ AH
Sbjct: 82 GNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHT 141
Query: 431 IVSGTEKPVLLAPIPYEFVA 490
+ + +P LLAP+ +E VA
Sbjct: 142 VTTQNNEPELLAPLRFEIVA 161
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.091
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 199 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 62
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 33.5 bits (73), Expect = 0.091
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 199 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 62
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 33.5 bits (73), Expect = 0.091
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 199 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 62
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 30.3 bits (65), Expect = 0.85
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 116 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAC 253
Q RHC Q C S Y W+ RSRV +C+ + Q C
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 392 NLKRQPAPPKAAHIVSGTE 448
NL+R+PAPPK H+ S E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 25.0 bits (52), Expect(2) = 1.8
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = +2
Query: 119 SWRHCRHQRQWCSSKG---YATQSIPWKDRSRVQRDCSCSRCDCQQACCGRIIP 271
SW+ Q + C ++G + S R R+Q DC CC ++P
Sbjct: 14 SWKEVHGQLRLCEAEGSCRHCADSRYSYYRCRMQDDCFIGEICDNGFCCPNVLP 67
Score = 22.6 bits (46), Expect(2) = 1.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 386 TVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 481
T +L+R+P PK ++ T P P P E
Sbjct: 68 TFSLQREPTSPKPKRPLNITSDPPADEPCPDE 99
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 143 RQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACCG 259
R S+ + SI SRV+R C C C CCG
Sbjct: 37 RSSASTTSSSETSIDTLGSSRVKRQGGCGCCGCGCGCCG 75
>AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical
protein Y80D3A.9 protein.
Length = 279
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 457 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 371
DG LS D+ RG+WL + G G L
Sbjct: 39 DGMLSGVDEKDVARGTWLGMDAHGKVGML 67
>AC006769-14|AAF60579.1| 378|Caenorhabditis elegans Hypothetical
protein Y45G12C.1 protein.
Length = 378
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 310 GVLDMLNT-DIDALRYNPSATRLLTITPRA*AVTLYTRPVFPWYTLCGI 167
G+LD T DID L+ N + +L + A T +T + W+TLC +
Sbjct: 272 GLLDYFPTFDIDDLKSNEKSLQLSAMLVYL-ARTQFTLDILKWHTLCAL 319
>Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical
protein F49E2.5d protein.
Length = 889
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 290 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 466
VE+V + K+N++ K++++ T ++ PAPP+ +V EKPV A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418
Query: 467 PI 472
P+
Sbjct: 419 PV 420
>Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical
protein R186.1 protein.
Length = 276
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 457 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 371
DG LS D + RG+WL L +G G +
Sbjct: 39 DGILSGVDKQENARGTWLGLNENGRIGMM 67
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 155 SSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACCG 259
S+ + SI SRV+R C C C CCG
Sbjct: 40 STTSSSETSIDTLGSSRVKRQGGCGCCGCGCGCCG 74
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 155 SSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACCG 259
S+ + SI SRV+R C C C CCG
Sbjct: 42 STTSSSETSIDTLGSSRVKRQGGCGCCGCGCGCCG 76
>Z78060-2|CAB01490.1| 114|Caenorhabditis elegans Hypothetical
protein C34D1.2 protein.
Length = 114
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 197 RSRVQRDCSCSRCDCQQACCGRIIPKRI-NIRVEH 298
R R C C DC CG + +RI NIR+++
Sbjct: 53 RPRKNHKCECPYADCTCEKCGLVEKRRILNIRLQN 87
>Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical
protein C06H5.2 protein.
Length = 382
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 352 LILFDSLKEVLSALGVL 302
LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216
>Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical
protein C06H5.1 protein.
Length = 379
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 352 LILFDSLKEVLSALGVL 302
LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 200 SRVQRDCSCSRCDCQQACCG 259
SRV+R C C C CCG
Sbjct: 55 SRVKRQGGCGCCGCGCGCCG 74
>U97194-9|AAB52452.1| 336|Caenorhabditis elegans Hypothetical
protein C37A2.8a protein.
Length = 336
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +3
Query: 168 MPHKVYHGKTGRVYNVTAHALGVIVNKRVAEGLYRSASISVLSMSSTPSADKTSLRESKR 347
+P +H + RVY + L + NKR E +L MS DK +E+++
Sbjct: 189 IPEHYHHSEEQRVYGTSHMRLSLNENKRKEE------IEKLLEMSKKTDMDKAKKKETEK 242
Query: 348 MRGY*RKPRL 377
R R+ +L
Sbjct: 243 HRDILRREKL 252
>U00065-10|AAA50733.2| 382|Caenorhabditis elegans Hypothetical
protein D1044.1 protein.
Length = 382
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 173 TQSIPWKDRSRVQRDCSCSRCDCQQAC-CGRIIPKRINIRVEHVKHSKCRQDFLKRVKEN 349
+ IPWK+ V D + R ++ P ++ R++ VKH+ K+N
Sbjct: 177 SDEIPWKNYENVLYDAAYIRMLHNDTLDFEKLCPAELSGRIQEVKHAFDEDGVRNSEKKN 236
Query: 350 ERL 358
E+L
Sbjct: 237 EKL 239
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +2
Query: 266 IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 445
+P R+ V+ + ++ +R KE+E + + + + R P PP I
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266
Query: 446 EKPVLLAPIPYE 481
+ L IP E
Sbjct: 267 PPNIPLPTIPQE 278
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +2
Query: 266 IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 445
+P R+ V+ + ++ +R KE+E + + + + R P PP I
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266
Query: 446 EKPVLLAPIPYE 481
+ L IP E
Sbjct: 267 PPNIPLPTIPQE 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,646,710
Number of Sequences: 27780
Number of extensions: 242630
Number of successful extensions: 986
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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