Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30607.Seq
(499 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC105292-1|AAI05293.1| 130|Homo sapiens ribosomal protein S15a ... 140 2e-33
BC105273-1|AAI05274.1| 130|Homo sapiens ribosomal protein S15a ... 140 2e-33
BC046113-1|AAH46113.1| 130|Homo sapiens ribosomal protein S15a ... 140 2e-33
BC030569-1|AAH30569.1| 130|Homo sapiens ribosomal protein S15a ... 140 2e-33
BC001697-1|AAH01697.1| 130|Homo sapiens ribosomal protein S15a ... 140 2e-33
AY208299-1|AAO48936.1| 130|Homo sapiens S15a protein. 140 2e-33
AB062400-1|BAB93487.1| 130|Homo sapiens OK/SW-cl.82 protein. 140 2e-33
X84407-1|CAA59127.1| 130|Homo sapiens ribosomal protein S15a pr... 139 4e-33
X62691-1|CAA44568.1| 129|Homo sapiens ribosomal protein homolog... 106 4e-23
BC071775-1|AAH71775.1| 37|Homo sapiens Unknown (protein for MG... 42 0.001
X97187-1|CAA65825.1| 1704|Homo sapiens ABC-C transporter protein. 30 5.1
U78735-1|AAC50967.1| 1704|Homo sapiens ABC3 protein. 30 5.1
DQ073080-1|AAY57325.1| 1704|Homo sapiens ATP-binding cassette, s... 30 5.1
AB210044-1|BAE06126.1| 1708|Homo sapiens ABCA3 variant protein p... 30 5.1
AB070929-1|BAB86781.1| 1704|Homo sapiens lamellar body membrane ... 30 5.1
>BC105292-1|AAI05293.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 140 bits (340), Expect = 2e-33
Identities = 66/70 (94%), Positives = 70/70 (100%)
Frame = -1
Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
MVRMNVL+DALKSI+NAEKRGKRQVLIRPCSKVIV+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 286 IVVNLTGRLN 257
IVVNLTGRLN
Sbjct: 61 IVVNLTGRLN 70
Score = 84.2 bits (199), Expect = 2e-16
Identities = 37/48 (77%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
Frame = -3
Query: 257 QCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARR 117
+CGVISPRFDV + D+E+W NLLPSRQFG++VLTTS GIMDHEEARR
Sbjct: 71 KCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 118
>BC105273-1|AAI05274.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 140 bits (340), Expect = 2e-33
Identities = 66/70 (94%), Positives = 70/70 (100%)
Frame = -1
Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
MVRMNVL+DALKSI+NAEKRGKRQVLIRPCSKVIV+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 286 IVVNLTGRLN 257
IVVNLTGRLN
Sbjct: 61 IVVNLTGRLN 70
Score = 84.2 bits (199), Expect = 2e-16
Identities = 37/48 (77%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
Frame = -3
Query: 257 QCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARR 117
+CGVISPRFDV + D+E+W NLLPSRQFG++VLTTS GIMDHEEARR
Sbjct: 71 KCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 118
>BC046113-1|AAH46113.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 140 bits (340), Expect = 2e-33
Identities = 66/70 (94%), Positives = 70/70 (100%)
Frame = -1
Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
MVRMNVL+DALKSI+NAEKRGKRQVLIRPCSKVIV+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 286 IVVNLTGRLN 257
IVVNLTGRLN
Sbjct: 61 IVVNLTGRLN 70
Score = 84.2 bits (199), Expect = 2e-16
Identities = 37/48 (77%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
Frame = -3
Query: 257 QCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARR 117
+CGVISPRFDV + D+E+W NLLPSRQFG++VLTTS GIMDHEEARR
Sbjct: 71 KCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 118
>BC030569-1|AAH30569.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 140 bits (340), Expect = 2e-33
Identities = 66/70 (94%), Positives = 70/70 (100%)
Frame = -1
Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
MVRMNVL+DALKSI+NAEKRGKRQVLIRPCSKVIV+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 286 IVVNLTGRLN 257
IVVNLTGRLN
Sbjct: 61 IVVNLTGRLN 70
Score = 84.2 bits (199), Expect = 2e-16
Identities = 37/48 (77%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
Frame = -3
Query: 257 QCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARR 117
+CGVISPRFDV + D+E+W NLLPSRQFG++VLTTS GIMDHEEARR
Sbjct: 71 KCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 118
>BC001697-1|AAH01697.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 140 bits (340), Expect = 2e-33
Identities = 66/70 (94%), Positives = 70/70 (100%)
Frame = -1
Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
MVRMNVL+DALKSI+NAEKRGKRQVLIRPCSKVIV+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 286 IVVNLTGRLN 257
IVVNLTGRLN
Sbjct: 61 IVVNLTGRLN 70
Score = 81.0 bits (191), Expect = 2e-15
Identities = 36/48 (75%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Frame = -3
Query: 257 QCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARR 117
+CGVISPR DV + D+E+W NLLPSRQFG++VLTTS GIMDHEEARR
Sbjct: 71 KCGVISPRSDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 118
>AY208299-1|AAO48936.1| 130|Homo sapiens S15a protein.
Length = 130
Score = 140 bits (340), Expect = 2e-33
Identities = 66/70 (94%), Positives = 70/70 (100%)
Frame = -1
Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
MVRMNVL+DALKSI+NAEKRGKRQVLIRPCSKVIV+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 286 IVVNLTGRLN 257
IVVNLTGRLN
Sbjct: 61 IVVNLTGRLN 70
Score = 84.2 bits (199), Expect = 2e-16
Identities = 37/48 (77%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
Frame = -3
Query: 257 QCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARR 117
+CGVISPRFDV + D+E+W NLLPSRQFG++VLTTS GIMDHEEARR
Sbjct: 71 KCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 118
>AB062400-1|BAB93487.1| 130|Homo sapiens OK/SW-cl.82 protein.
Length = 130
Score = 140 bits (340), Expect = 2e-33
Identities = 66/70 (94%), Positives = 70/70 (100%)
Frame = -1
Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
MVRMNVL+DALKSI+NAEKRGKRQVLIRPCSKVIV+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 286 IVVNLTGRLN 257
IVVNLTGRLN
Sbjct: 61 IVVNLTGRLN 70
Score = 84.2 bits (199), Expect = 2e-16
Identities = 37/48 (77%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
Frame = -3
Query: 257 QCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARR 117
+CGVISPRFDV + D+E+W NLLPSRQFG++VLTTS GIMDHEEARR
Sbjct: 71 KCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 118
>X84407-1|CAA59127.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 139 bits (337), Expect = 4e-33
Identities = 65/70 (92%), Positives = 70/70 (100%)
Frame = -1
Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
MVRMNVL+DALKSI+NAEKRGKRQVLIRPCSKVIV+FLT+MMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTLMMKHGYIGEFEIIDDHRAGK 60
Query: 286 IVVNLTGRLN 257
IVVNLTGRLN
Sbjct: 61 IVVNLTGRLN 70
Score = 84.2 bits (199), Expect = 2e-16
Identities = 37/48 (77%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
Frame = -3
Query: 257 QCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARR 117
+CGVISPRFDV + D+E+W NLLPSRQFG++VLTTS GIMDHEEARR
Sbjct: 71 KCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 118
>X62691-1|CAA44568.1| 129|Homo sapiens ribosomal protein homologous
to yeast S24 protein.
Length = 129
Score = 106 bits (255), Expect = 4e-23
Identities = 54/70 (77%), Positives = 59/70 (84%)
Frame = -1
Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
MVRMNVL+DALKSI+NAEKRGKR+ L+ LTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRRCLLGRLQSHR-PVLTVMMKHGYIGEFEIIDDHRAGK 59
Query: 286 IVVNLTGRLN 257
IVVNLTGRLN
Sbjct: 60 IVVNLTGRLN 69
Score = 84.2 bits (199), Expect = 2e-16
Identities = 37/48 (77%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
Frame = -3
Query: 257 QCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARR 117
+CGVISPRFDV + D+E+W NLLPSRQFG++VLTTS GIMDHEEARR
Sbjct: 70 KCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 117
>BC071775-1|AAH71775.1| 37|Homo sapiens Unknown (protein for
MGC:88417) protein.
Length = 37
Score = 42.3 bits (95), Expect = 0.001
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = -1
Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKF 356
MV MNVL+ ALKSI+N + RGK QVL R C ++ F
Sbjct: 1 MVHMNVLTIALKSINNVKTRGKHQVLRRLCPVLLSSF 37
>X97187-1|CAA65825.1| 1704|Homo sapiens ABC-C transporter protein.
Length = 1704
Score = 29.9 bits (64), Expect = 5.1
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -1
Query: 349 VMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNNVVSFHLVLMFPSTILKDGLICSPH 182
V + GY +F+ + DH G+ ++ + RL + H+ +T+ GL+ PH
Sbjct: 1454 VRQRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTL--RGLLLEPH 1507
>U78735-1|AAC50967.1| 1704|Homo sapiens ABC3 protein.
Length = 1704
Score = 29.9 bits (64), Expect = 5.1
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -1
Query: 349 VMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNNVVSFHLVLMFPSTILKDGLICSPH 182
V + GY +F+ + DH G+ ++ + RL + H+ +T+ GL+ PH
Sbjct: 1454 VRQRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTL--RGLLLEPH 1507
>DQ073080-1|AAY57325.1| 1704|Homo sapiens ATP-binding cassette,
sub-family A (ABC1), member 3 protein.
Length = 1704
Score = 29.9 bits (64), Expect = 5.1
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -1
Query: 349 VMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNNVVSFHLVLMFPSTILKDGLICSPH 182
V + GY +F+ + DH G+ ++ + RL + H+ +T+ GL+ PH
Sbjct: 1454 VRQRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTL--RGLLLEPH 1507
>AB210044-1|BAE06126.1| 1708|Homo sapiens ABCA3 variant protein
protein.
Length = 1708
Score = 29.9 bits (64), Expect = 5.1
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -1
Query: 349 VMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNNVVSFHLVLMFPSTILKDGLICSPH 182
V + GY +F+ + DH G+ ++ + RL + H+ +T+ GL+ PH
Sbjct: 1458 VRQRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTL--RGLLLEPH 1511
>AB070929-1|BAB86781.1| 1704|Homo sapiens lamellar body membrane
specific ATP-binding cassette protein protein.
Length = 1704
Score = 29.9 bits (64), Expect = 5.1
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -1
Query: 349 VMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNNVVSFHLVLMFPSTILKDGLICSPH 182
V + GY +F+ + DH G+ ++ + RL + H+ +T+ GL+ PH
Sbjct: 1454 VRQRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTL--RGLLLEPH 1507
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,061,402
Number of Sequences: 237096
Number of extensions: 994663
Number of successful extensions: 1494
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -