Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30607.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   134   3e-32
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  134 bits (324), Expect = 3e-32
 Identities = 64/70 (91%), Positives = 68/70 (97%)
 Frame = -1

Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
           MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEIVDDHRAGK
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 286 IVVNLTGRLN 257
           IVVNLTGRLN
Sbjct: 61  IVVNLTGRLN 70



 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 34/48 (70%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
 Frame = -3

Query: 257 QCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARR 117
           +  VISPR ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARR
Sbjct: 71  KASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARR 118


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
            F37A4.4 protein.
          Length = 1163

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 454  NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 281
            NVL D+++ I+  N  K  KR   I  C+K     L V  + GY    EI+  H A +  
Sbjct: 826  NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885

Query: 280  VN 275
            +N
Sbjct: 886  LN 887


>U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical
           protein F22A3.2 protein.
          Length = 145

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 254 IV*SACEIYNNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPDEDL 397
           +V +A E ++   +  +   F+  +V V +     ++DDFG+ PD+DL
Sbjct: 15  VVLAASESHSGRQNYRVKGAFRCGNVPVKNVQVKLIDDDFGSDPDDDL 62


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = -2

Query: 183 TTVWL-PSPYNKWW 145
           T +WL P PYN WW
Sbjct: 29  TVIWLIPRPYNYWW 42


>U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical protein
            F09F7.3 protein.
          Length = 1154

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 272  HRQTKQCGVISPRFDVPINDIERWTNLLPSRQFGYLVLTTSGGIMD 135
            H Q   CG+I+ + D+P ND+    +++     GY    T G +M+
Sbjct: 922  HGQKGVCGLIAQQEDMPFNDLGMVPDMI-MNPHGYPSRMTVGKLME 966


>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical
           protein F35G12.8 protein.
          Length = 1549

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 337 HGYIGEFEIVDDHRAGKIVVNLTGRLNNVV 248
           HG +G+  ++D    G I  N   RLN ++
Sbjct: 622 HGRLGDLGVIDPKYEGAICTNFGARLNYLI 651


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,888,219
Number of Sequences: 27780
Number of extensions: 164042
Number of successful extensions: 369
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)