Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30607.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 120 4e-28
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 120 4e-28
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 120 4e-28
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 119 1e-27
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 118 3e-27
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 74 5e-14
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 74 6e-14
At1g18390.1 68414.m02297 protein kinase family protein contains ... 29 1.7
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ... 27 7.0
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 120 bits (290), Expect = 4e-28
Identities = 56/70 (80%), Positives = 64/70 (91%)
Frame = -1
Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 286 IVVNLTGRLN 257
IVV L GRLN
Sbjct: 61 IVVELNGRLN 70
Score = 83.0 bits (196), Expect = 1e-16
Identities = 38/48 (79%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Frame = -3
Query: 257 QCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARR 117
+CGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARR
Sbjct: 71 KCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 120 bits (290), Expect = 4e-28
Identities = 56/70 (80%), Positives = 64/70 (91%)
Frame = -1
Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 286 IVVNLTGRLN 257
IVV L GRLN
Sbjct: 61 IVVELNGRLN 70
Score = 83.0 bits (196), Expect = 1e-16
Identities = 38/48 (79%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Frame = -3
Query: 257 QCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARR 117
+CGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARR
Sbjct: 71 KCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 120 bits (290), Expect = 4e-28
Identities = 56/70 (80%), Positives = 64/70 (91%)
Frame = -1
Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 286 IVVNLTGRLN 257
IVV L GRLN
Sbjct: 61 IVVELNGRLN 70
Score = 83.0 bits (196), Expect = 1e-16
Identities = 38/48 (79%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Frame = -3
Query: 257 QCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARR 117
+CGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARR
Sbjct: 71 KCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 119 bits (286), Expect = 1e-27
Identities = 55/70 (78%), Positives = 63/70 (90%)
Frame = -1
Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 286 IVVNLTGRLN 257
IVV L GRLN
Sbjct: 61 IVVELNGRLN 70
Score = 81.4 bits (192), Expect = 3e-16
Identities = 37/48 (77%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Frame = -3
Query: 257 QCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARR 117
+CGVISPRFDV + +IE WT LLPSRQFG++VLTTS GIMDHEEARR
Sbjct: 71 KCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARR 118
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 118 bits (283), Expect = 3e-27
Identities = 55/71 (77%), Positives = 62/71 (87%)
Frame = -1
Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GK
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66
Query: 286 IVVNLTGRLNN 254
IVV L GRLNN
Sbjct: 67 IVVELNGRLNN 77
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/47 (74%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
Frame = -3
Query: 254 CGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARR 117
CGVISPR+D+ + +IE WT LLPSRQFGY+VLTTS GIMDHEEAR+
Sbjct: 78 CGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARK 124
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 74.1 bits (174), Expect = 5e-14
Identities = 33/66 (50%), Positives = 48/66 (72%)
Frame = -1
Query: 451 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 272
+L+DAL++I NAEKRGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64
Query: 271 TGRLNN 254
GR+N+
Sbjct: 65 QGRVND 70
Score = 50.8 bits (116), Expect = 5e-07
Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = -3
Query: 266 QTKQCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEA 123
+ C ++ R DV N+I ++T LP+RQ+GY+V+TT GI+DHEEA
Sbjct: 67 RVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEA 115
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 73.7 bits (173), Expect = 6e-14
Identities = 32/66 (48%), Positives = 48/66 (72%)
Frame = -1
Query: 451 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 272
+L+DAL++I NAE+RGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64
Query: 271 TGRLNN 254
GR+N+
Sbjct: 65 QGRVND 70
Score = 50.8 bits (116), Expect = 5e-07
Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = -3
Query: 266 QTKQCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEA 123
+ C ++ R DV +IE++T LP+RQ+GY+V+TT GI+DHEEA
Sbjct: 67 RVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEA 115
>At1g18390.1 68414.m02297 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 605
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -1
Query: 388 IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 281
+RPC + LT + +G+ E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591
>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
similar to DNA-binding protein DF1 [Pisum sativum]
GI:13646986
Length = 603
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 243 NDTTLFSLPVRFTTILPAL*SSTI 314
N++++FS P TT++P L SS+I
Sbjct: 177 NNSSIFSTPPPVTTVMPTLPSSSI 200
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,441,186
Number of Sequences: 28952
Number of extensions: 156336
Number of successful extensions: 316
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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