Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30606.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   108   9e-25
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   108   9e-25
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   6.0  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   7.9  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  108 bits (259), Expect = 9e-25
 Identities = 50/70 (71%), Positives = 59/70 (84%)
 Frame = -3

Query: 465 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 286
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 285 IVVNLTGRLN 256
           IV+ L GR+N
Sbjct: 61  IVIQLNGRIN 70



 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 42/60 (70%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
 Frame = -2

Query: 256 QCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 80
           +CGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 71  KCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  108 bits (259), Expect = 9e-25
 Identities = 50/70 (71%), Positives = 59/70 (84%)
 Frame = -3

Query: 465 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 286
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 285 IVVNLTGRLN 256
           IV+ L GR+N
Sbjct: 61  IVIQLNGRIN 70



 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 42/60 (70%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
 Frame = -2

Query: 256 QCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 80
           +CGVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 71  KCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 279 VNLTGRLNSVVSFHLVLMFPSTILKDGLICS 187
           V+L  +   +  F++ + FPS ++KDG+  S
Sbjct: 88  VSLNSKKEPLSKFNVKIHFPSNVMKDGVAFS 118


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 186 PHDSLVT*SLQQVVASWTMKKPEENTLEEK 97
           P+ S +T SL Q +  W +++PE     EK
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPESMLDAEK 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,652
Number of Sequences: 5004
Number of extensions: 52242
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)