Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30606.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          120   8e-28
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   120   1e-27
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           75   5e-14
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    31   1.2  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  120 bits (290), Expect = 8e-28
 Identities = 56/70 (80%), Positives = 64/70 (91%)
 Frame = -3

Query: 465 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 286
           MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 285 IVVNLTGRLN 256
           IVV L GRLN
Sbjct: 61  IVVELNGRLN 70



 Score =  104 bits (249), Expect = 8e-23
 Identities = 46/60 (76%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
 Frame = -2

Query: 256 QCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 80
           +CGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 71  KCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  120 bits (288), Expect = 1e-27
 Identities = 55/70 (78%), Positives = 64/70 (91%)
 Frame = -3

Query: 465 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 286
           MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 285 IVVNLTGRLN 256
           IVV L GRLN
Sbjct: 61  IVVELNGRLN 70



 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 43/56 (76%), Positives = 49/56 (87%), Gaps = 1/56 (1%)
 Frame = -2

Query: 256 QCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 92
           +CGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L
Sbjct: 71  KCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 33/64 (51%), Positives = 47/64 (73%)
 Frame = -3

Query: 450 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 271
           +L+DAL+++ NAE+RGK   L++P S V+V FL +M   GYI +FE++D HR GKI V L
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64

Query: 270 TGRL 259
            GR+
Sbjct: 65  HGRI 68



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 27/64 (42%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
 Frame = -2

Query: 271 HRQTKQCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 95
           H + K C  ++ R D+   +IE++   +LP+RQ+GY+V+TT  G++DHEEA ++++GG++
Sbjct: 65  HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQV 124

Query: 94  LGFF 83
           LG+F
Sbjct: 125 LGYF 128


>01_01_0365 -
           2859617-2859722,2860047-2860489,2862232-2862391,
           2863431-2863516,2863648-2866272
          Length = 1139

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
 Frame = -3

Query: 309 VDDHRAGKIVVNLTGRLN--SVVSF 241
           VDDH++G+I++   GRLN   V+SF
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISF 936


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,042,726
Number of Sequences: 37544
Number of extensions: 378665
Number of successful extensions: 796
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)