Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30604.Seq
         (777 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   4.8  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   6.3  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   8.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   8.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   8.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   8.3  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 497 LCILAVGTGLVSAAANSINQYHEV 568
           L +L++  G+VSAA N +  YH +
Sbjct: 6   LALLSI-LGIVSAATNKVVCYHGI 28


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 297 LKTQTTATVKNKVTQDTR 350
           L+ +    +KNKVT DTR
Sbjct: 400 LEIEDWVLLKNKVTSDTR 417


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 699 VNPLTAALGSRKPHSSTP 752
           V+P  AA+  R PH + P
Sbjct: 204 VSPFLAAMAHRPPHFAFP 221


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 471 LVRILP*TSTQLMMLTVI*IASNNTVPYCSSCHMMVFPS 355
           L R  P T+T +   TV     +NT+P  +S   M FP+
Sbjct: 248 LNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 286


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 471 LVRILP*TSTQLMMLTVI*IASNNTVPYCSSCHMMVFPS 355
           L R  P T+T +   TV     +NT+P  +S   M FP+
Sbjct: 196 LNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 234


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 471 LVRILP*TSTQLMMLTVI*IASNNTVPYCSSCHMMVFPS 355
           L R  P T+T +   TV     +NT+P  +S   M FP+
Sbjct: 379 LNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 417


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,378
Number of Sequences: 336
Number of extensions: 4557
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)