Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30604.Seq
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0176 - 18957676-18958067,18958139-18958242,18958358-189584...    49   4e-06
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    33   0.33 
08_02_0193 - 14073103-14073246,14073332-14073481,14073571-140736...    32   0.58 
02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841...    30   2.4  
09_06_0222 - 21655236-21655841                                         29   4.1  
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349...    28   7.2  

>01_05_0176 -
           18957676-18958067,18958139-18958242,18958358-18958483,
           18959495-18959628,18959757-18959894,18960835-18960964,
           18961316-18961357,18964741-18965024
          Length = 449

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
 Frame = +2

Query: 497 LCILAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHGNRFC-SIGPSSV 673
           LC    GT +V+A+AN++NQ  E+  DA+M RT  R L  G + P H   +  S+G +  
Sbjct: 133 LCCTCAGTMMVAASANTLNQVFEIKNDAKMKRTMRRPLPSGRISPAHAAMWATSVGVAGT 192

Query: 674 GLGRFVFWGQPLDSCTREQETSFLYTSVYTQ*KR 775
            L   + W     +         LY  VYT  K+
Sbjct: 193 AL---LAWKANGLAAGLAASNLILYAFVYTPLKQ 223


>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
            26834330-26834732,26834840-26835118,26835285-26835716,
            26836362-26836838,26837171-26837212,26837285-26837545,
            26837637-26838938,26839146-26839575,26839643-26840046,
            26840360-26840716,26840842-26841102,26841494-26842141,
            26842231-26842452,26842547-26842768,26842860-26843009,
            26843739-26844111,26844467-26844689,26845167-26845425,
            26845585-26845920,26846013-26846999,26848395-26849624,
            26849706-26849768,26849858-26849910,26849998-26850079,
            26850520-26850588,26851070-26851129,26851205-26851267,
            26851993-26852101,26852742-26852827,26853120-26853847,
            26854613-26854676
          Length = 3716

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 611  VKGLLEPVHGNRFCSIGPSSVGLGRFVFWGQPLDSCTREQETSFLYTSV 757
            +  +LEP   N+    G S   L + VF   PL++ T  Q+   LY  V
Sbjct: 2094 ISQILEPCFNNKMLDAGKSLCSLLKMVFSAFPLEAATTPQDIKLLYQRV 2142


>08_02_0193 -
           14073103-14073246,14073332-14073481,14073571-14073640,
           14073900-14074021,14074260-14074395,14074492-14074967
          Length = 365

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +2

Query: 497 LCILAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHGNRFCSIGPSSVG 676
           L +   G  L+  A  ++N   +   D ++ RTK+R    G+L P  G  F  +    +G
Sbjct: 176 LALFGCGAVLLRGAGCTVNDLLDRDIDNKVERTKSRPFASGILTPTQGVGFLGL-QLLLG 234

Query: 677 LG 682
           LG
Sbjct: 235 LG 236


>02_05_0997 +
           33382756-33382861,33383070-33383161,33383936-33384175,
           33384820-33384900,33384974-33385113,33385462-33385622,
           33385700-33385800,33385895-33385969,33386218-33386488,
           33386657-33386697,33386922-33387004,33387100-33387189,
           33387721-33387825,33388023-33388161,33388467-33388670,
           33388837-33388908,33389189-33389273,33389374-33389480
          Length = 730

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -1

Query: 396 VPYCSSCHMMVFPSILWC--LG*LYSLPLQLSEF*VELYFSSFVLLIFWQMLEECV 235
           VP+ S+C + +F  +  C  LG L  +PL +SE+ + ++  S     F+  + +CV
Sbjct: 393 VPFFSACFLAMFSILNLCFNLGLLPEIPLPVSEYDILVHVVSAEFQNFFSWVLKCV 448


>09_06_0222 - 21655236-21655841
          Length = 201

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 437 SCVDVYGRIRTSTCPVSTYYLCILAVGTGLVSAAA 541
           +CVDV+  + TSTCP     + +LA  +  V+AAA
Sbjct: 132 ACVDVW-LVSTSTCPSCRRAIVVLAAPSPAVTAAA 165


>02_01_0486 -
           3495792-3496034,3496862-3496934,3497128-3497422,
           3497585-3497759,3498349-3498795,3499994-3500053
          Length = 430

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +3

Query: 321 VKNKVTQDTRVWKETPSYDRKSNTGQYCL---MLSKSRLTSLVVLTSMAGYALA 473
           V+ +     R WKETP     S    +C    +L K      ++L S  G+ +A
Sbjct: 317 VQQRAAHPHRFWKETPVLVMVSTLAYFCFLEQLLLKMGAVLAILLASFTGFGIA 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,528,048
Number of Sequences: 37544
Number of extensions: 461089
Number of successful extensions: 963
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)