Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30604.Seq
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56760| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_10731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  

>SB_56760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -2

Query: 761 CTLRCRGMRFP---AP*CSCQGVDPKIQNAQGLRCLVQCCKTYCHGRALINL*QAPCSL 594
           C+L  R  R     AP  SC+  +P+    Q LR   Q    YCH   ++N    P ++
Sbjct: 37  CSLETRVQRLEMSTAPMTSCRAANPQNNGEQTLRINGQQFSAYCHVDPIVNCGPGPWTM 95


>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1250

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 121  ARRINLIMSYLKVIHCTLCLKHGYVGVYSKPVLFKITNNTLFQHLPEYQQHKT 279
            A R+N IM Y K+    L L+ G V  Y  P       + +F+HL E   H T
Sbjct: 1201 AHRLNTIMDYDKI----LVLERGRVAEYGTPQELMEMPDGVFRHLYESHVHHT 1249


>SB_10731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 467 TSTCPVSTYYLCILAVGTGLVSAAANSINQYHEVPFD-AQMSRTKNRV 607
           T  CPV  + +      T  VS + ++ +    VPFD  ++ RT NR+
Sbjct: 73  TIRCPVRVWCVLFATFETSGVSKSNDTSSSVSHVPFDTVEIDRTTNRI 120


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 108 QLLNTII--YSKRIRSSVMHNNTIMFFEY 28
           QL  ++I   +KR+R SV+HNN  + F Y
Sbjct: 373 QLFRSVIDEETKRVRDSVIHNNETLSFTY 401


>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +3

Query: 303 TQTTATVKNKVTQDTRV-----WKETPSYD-RKSNTGQYCLMLSKSRLTSLVVLTSMAGY 464
           T T+  V NK +   +V     ++  PS+   K+NTGQ  L+  ++ L +     S+   
Sbjct: 287 TSTSENVLNKTSNSKKVESAENFERLPSFQANKNNTGQDSLINIQTSLNASQRAQSLNAA 346

Query: 465 ALAPAPF 485
           +  PAPF
Sbjct: 347 SEGPAPF 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,131,818
Number of Sequences: 59808
Number of extensions: 557056
Number of successful extensions: 1072
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)