Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30604.Seq
(777 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY058639-1|AAL13868.1| 391|Drosophila melanogaster LD33876p pro... 93 5e-19
AE014134-1840|AAF52915.1| 391|Drosophila melanogaster CG5037-PA... 93 5e-19
BT011373-1|AAR96165.1| 120|Drosophila melanogaster LP14856p pro... 29 5.4
AY071510-1|AAL49132.1| 916|Drosophila melanogaster RE56564p pro... 29 5.4
AE014298-2004|AAF48346.2| 120|Drosophila melanogaster CG12481-P... 29 5.4
AE014298-760|AAF46050.1| 916|Drosophila melanogaster CG11473-PA... 29 5.4
AJ439431-1|CAD28424.1| 76|Drosophila melanogaster reverse tran... 29 7.1
>AY058639-1|AAL13868.1| 391|Drosophila melanogaster LD33876p
protein.
Length = 391
Score = 92.7 bits (220), Expect = 5e-19
Identities = 50/97 (51%), Positives = 64/97 (65%)
Frame = +2
Query: 485 STYYLCILAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHGNRFCSIGP 664
+T+ +C L GTGLVSAAAN+INQYHEVPFD+QMSRTKNRVLV G + P+H F ++
Sbjct: 106 TTFAMCTL--GTGLVSAAANAINQYHEVPFDSQMSRTKNRVLVTGQMTPLHAVTFAAVS- 162
Query: 665 SSVGLGRFVFWGQPLDSCTREQETSFLYTSVYTQ*KR 775
++ GL F L + FLYT++YT KR
Sbjct: 163 ATAGLSMLYFGVNGLTAALGAGNL-FLYTTIYTPMKR 198
Score = 71.3 bits (167), Expect = 1e-12
Identities = 54/143 (37%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Frame = +3
Query: 354 WKETPSYDRKSNTGQYCLMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFAFXXXXXXXXX 533
W +P Y T LSK RLTSLVV+T+M GYA+APA F TTFA
Sbjct: 61 WMPSP-YTMPGKTLSQYKKLSKFRLTSLVVITTMGGYAMAPAAFDPTTFAMCTLGTGLVS 119
Query: 534 XXXTL*ISIMKYHLMP---KCRGQRTGCLSKVY*SPSMAIGFAALDQAA*ALGVLYFGVN 704
+I +YH +P + + L +P A+ FAA+ A L +LYFGVN
Sbjct: 120 AAAN---AINQYHEVPFDSQMSRTKNRVLVTGQMTPLHAVTFAAVSATA-GLSMLYFGVN 175
Query: 705 PLTAALGSRKPHSSTPQCTPNEK 773
LTAALG+ T TP ++
Sbjct: 176 GLTAALGAGNLFLYTTIYTPMKR 198
>AE014134-1840|AAF52915.1| 391|Drosophila melanogaster CG5037-PA
protein.
Length = 391
Score = 92.7 bits (220), Expect = 5e-19
Identities = 50/97 (51%), Positives = 64/97 (65%)
Frame = +2
Query: 485 STYYLCILAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHGNRFCSIGP 664
+T+ +C L GTGLVSAAAN+INQYHEVPFD+QMSRTKNRVLV G + P+H F ++
Sbjct: 106 TTFAMCTL--GTGLVSAAANAINQYHEVPFDSQMSRTKNRVLVTGQMTPLHAVTFAAVS- 162
Query: 665 SSVGLGRFVFWGQPLDSCTREQETSFLYTSVYTQ*KR 775
++ GL F L + FLYT++YT KR
Sbjct: 163 ATAGLSMLYFGVNGLTAALGAGNL-FLYTTIYTPMKR 198
Score = 71.3 bits (167), Expect = 1e-12
Identities = 54/143 (37%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Frame = +3
Query: 354 WKETPSYDRKSNTGQYCLMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFAFXXXXXXXXX 533
W +P Y T LSK RLTSLVV+T+M GYA+APA F TTFA
Sbjct: 61 WMPSP-YTMPGKTLSQYKKLSKFRLTSLVVITTMGGYAMAPAAFDPTTFAMCTLGTGLVS 119
Query: 534 XXXTL*ISIMKYHLMP---KCRGQRTGCLSKVY*SPSMAIGFAALDQAA*ALGVLYFGVN 704
+I +YH +P + + L +P A+ FAA+ A L +LYFGVN
Sbjct: 120 AAAN---AINQYHEVPFDSQMSRTKNRVLVTGQMTPLHAVTFAAVSATA-GLSMLYFGVN 175
Query: 705 PLTAALGSRKPHSSTPQCTPNEK 773
LTAALG+ T TP ++
Sbjct: 176 GLTAALGAGNLFLYTTIYTPMKR 198
>BT011373-1|AAR96165.1| 120|Drosophila melanogaster LP14856p
protein.
Length = 120
Score = 29.5 bits (63), Expect = 5.4
Identities = 16/71 (22%), Positives = 37/71 (52%)
Frame = +2
Query: 524 LVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHGNRFCSIGPSSVGLGRFVFWGQ 703
L S A ++Q P ++ ++ +++++ + EP+ + P+S+G ++ GQ
Sbjct: 15 LASTGAQPVSQTEMEPMLINVTTSRPKLVIEEM-EPMRYHFVTEHRPTSLGQNYYIKPGQ 73
Query: 704 PLDSCTREQET 736
P+ S T + +T
Sbjct: 74 PVGSITLDSDT 84
>AY071510-1|AAL49132.1| 916|Drosophila melanogaster RE56564p
protein.
Length = 916
Score = 29.5 bits (63), Expect = 5.4
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 557 YHEVPFDAQMSRTKNRVLVKGLLEP--VHGNRFCSIGPSSVGLGRFVFWG 700
Y E P DA+++ T V + HG+ F +G + GLG ++ G
Sbjct: 171 YQEAPVDAEVAVTPKNVRKRKTTHSDLTHGSFFLRVGAIAFGLGAMIYIG 220
>AE014298-2004|AAF48346.2| 120|Drosophila melanogaster CG12481-PB
protein.
Length = 120
Score = 29.5 bits (63), Expect = 5.4
Identities = 16/71 (22%), Positives = 37/71 (52%)
Frame = +2
Query: 524 LVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHGNRFCSIGPSSVGLGRFVFWGQ 703
L S A ++Q P ++ ++ +++++ + EP+ + P+S+G ++ GQ
Sbjct: 15 LASTGAQPVSQTEMEPMLINVTTSRPKLVIEEM-EPMRYHFVTEHRPTSLGQNYYIKPGQ 73
Query: 704 PLDSCTREQET 736
P+ S T + +T
Sbjct: 74 PVGSITLDSDT 84
>AE014298-760|AAF46050.1| 916|Drosophila melanogaster CG11473-PA
protein.
Length = 916
Score = 29.5 bits (63), Expect = 5.4
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 557 YHEVPFDAQMSRTKNRVLVKGLLEP--VHGNRFCSIGPSSVGLGRFVFWG 700
Y E P DA+++ T V + HG+ F +G + GLG ++ G
Sbjct: 171 YQEAPVDAEVAVTPKNVRKRKTTHSDLTHGSFFLRVGAIAFGLGAMIYIG 220
>AJ439431-1|CAD28424.1| 76|Drosophila melanogaster reverse
transcriptase protein.
Length = 76
Score = 29.1 bits (62), Expect = 7.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 260 SGRCWKSVLLVILNKTGFE*TPTYPC 183
SGR W +L +L K GF P+ PC
Sbjct: 36 SGREWNKLLNEVLQKIGFSSCPSEPC 61
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,570,940
Number of Sequences: 53049
Number of extensions: 819466
Number of successful extensions: 1713
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1708
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3602427675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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