Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30604.Seq
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical...    68   9e-12
AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical...    68   9e-12
U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical p...    29   2.8  
U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z79602-3|CAB01890.1|  474|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 39/99 (39%), Positives = 52/99 (52%)
 Frame = +2

Query: 479 PVSTYYLCILAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHGNRFCSI 658
           PV+   L    VGT L+S+AAN+ NQ  E P+DAQM RT+ RVLV     P+H   F  +
Sbjct: 118 PVAADSLIAATVGTFLLSSAANACNQLLEAPYDAQMRRTQTRVLVVHRFSPLHAFTFAGV 177

Query: 659 GPSSVGLGRFVFWGQPLDSCTREQETSFLYTSVYTQ*KR 775
                G+G   ++  PL +        F+Y  VYT  KR
Sbjct: 178 -TGLTGIGLLAYYANPLAAALGALNW-FIYAGVYTPMKR 214


>AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 39/99 (39%), Positives = 52/99 (52%)
 Frame = +2

Query: 479 PVSTYYLCILAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHGNRFCSI 658
           PV+   L    VGT L+S+AAN+ NQ  E P+DAQM RT+ RVLV     P+H   F  +
Sbjct: 118 PVAADSLIAATVGTFLLSSAANACNQLLEAPYDAQMRRTQTRVLVVHRFSPLHAFTFAGV 177

Query: 659 GPSSVGLGRFVFWGQPLDSCTREQETSFLYTSVYTQ*KR 775
                G+G   ++  PL +        F+Y  VYT  KR
Sbjct: 178 -TGLTGIGLLAYYANPLAAALGALNW-FIYAGVYTPMKR 214


>U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical
           protein C03G6.5 protein.
          Length = 224

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = -3

Query: 469 SAYPAIDVNTTNDVNRD--LDSIKQYCPVLLFLSYDGVS 359
           S Y  ++  T +D  +D  ++SIKQYC  ++++S DG S
Sbjct: 107 SCYSNLNCTTKSDDEKDKYVESIKQYCDAVVYVS-DGFS 144


>U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical
           protein C31H1.1 protein.
          Length = 693

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +2

Query: 527 VSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHGNRFCSIGPSSVGLGRFV 691
           +SA   SI   H   F      + +  +     E +HGN   S+ PSS  L   V
Sbjct: 158 ISANTASIPPNHGSEFSKDFKMSSSSSMTSEYSETIHGNSLASLAPSSQILSSLV 212


>Z79602-3|CAB01890.1|  474|Caenorhabditis elegans Hypothetical
           protein K09E9.3 protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 121 ARRINLIMSYLKVIHCTLCLKHGYVGVY 204
           A+RI L  SYL +IH   CL   Y  +Y
Sbjct: 443 AKRIALFSSYLFIIHPVFCLNITYFHLY 470


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,719,330
Number of Sequences: 27780
Number of extensions: 412633
Number of successful extensions: 912
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)