Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30604.Seq
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44520.1 68415.m05535 UbiA prenyltransferase family protein s...    45   6e-05
At4g23660.2 68417.m03407 UbiA prenyltransferase family protein s...    35   0.069
At4g23660.1 68417.m03406 UbiA prenyltransferase family protein s...    35   0.069
At4g30150.1 68417.m04287 expressed protein                             28   6.0  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   7.9  
At1g04200.1 68414.m00410 expressed protein Contains similarity t...    28   7.9  

>At2g44520.1 68415.m05535 UbiA prenyltransferase family protein
           similar to SP|Q12887 Protoheme IX farnesyltransferase,
           mitochondrial precursor (EC 2.5.1.-) (Heme O synthase)
           {Homo sapiens}, SP|P21592 COX10 {Saccharomyces
           cerevisiae}
          Length = 431

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 23/68 (33%), Positives = 36/68 (52%)
 Frame = +2

Query: 467 TSTCPVSTYYLCILAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHGNR 646
           T    +S   LC    GT +++A+ANS+NQ  E+  D++M RT  R L  G +   H   
Sbjct: 122 TGNAAISFPGLCYTCAGTMMIAASANSLNQIFEISNDSKMKRTMLRPLPSGRISVPHAVA 181

Query: 647 FCSIGPSS 670
           + +I  +S
Sbjct: 182 WATIAGAS 189


>At4g23660.2 68417.m03407 UbiA prenyltransferase family protein
           similar to para-hydroxybenzoate--polyprenyltransferase,
           mitochondrial [Precursor] [Saccharomyces cerevisiae],
           SP|P32378; contains PF01040 UbiA prenyltransferase
           family domain
          Length = 407

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +2

Query: 494 YLCILAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHGNRFCSIGPSSV 673
           Y+ +   G  L+  A  +IN   +   D ++ RTK R +  GLL P  G  F  +    +
Sbjct: 164 YMALFGCGALLLRGAGCTINDLLDQDIDTKVDRTKLRPIASGLLTPFQGIGFLGL-QLLL 222

Query: 674 GLG 682
           GLG
Sbjct: 223 GLG 225


>At4g23660.1 68417.m03406 UbiA prenyltransferase family protein
           similar to para-hydroxybenzoate--polyprenyltransferase,
           mitochondrial [Precursor] [Saccharomyces cerevisiae],
           SP|P32378; contains PF01040 UbiA prenyltransferase
           family domain
          Length = 407

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +2

Query: 494 YLCILAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLEPVHGNRFCSIGPSSV 673
           Y+ +   G  L+  A  +IN   +   D ++ RTK R +  GLL P  G  F  +    +
Sbjct: 164 YMALFGCGALLLRGAGCTINDLLDQDIDTKVDRTKLRPIASGLLTPFQGIGFLGL-QLLL 222

Query: 674 GLG 682
           GLG
Sbjct: 223 GLG 225


>At4g30150.1 68417.m04287 expressed protein
          Length = 2009

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -1

Query: 396 VPYCSSCHMMVFPSILWCLG*LYSLPLQLSEF*VELYFSS 277
           V +C+    +V+ S++ CLG L+S    +S   ++L+FS+
Sbjct: 227 VDFCNGQGFVVYSSVVDCLGLLFSSKSGMSNDNLDLWFST 266


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 611  VKGLLEPVHGNRFCSIGPSSVGLGRFVFWGQPLDSCTREQETSFLYTSV 757
            +  +LEP   ++    G S   L + VF   PLD+     +   LY  V
Sbjct: 2110 ISQILEPCFKHKMLDAGKSLCSLLKMVFTAFPLDAANTPPDIKLLYQKV 2158


>At1g04200.1 68414.m00410 expressed protein Contains similarity to
           gb|Z69902 from C. elegans
          Length = 732

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 450 TSTQLMMLTVI*IASNNTVPYCSSCHMMVFPSILW 346
           +S Q+ M+ ++ +  +    + SS H M+ PS+ W
Sbjct: 417 SSNQIYMMLIVLLILSQDSSFNSSIHKMILPSVPW 451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,500,675
Number of Sequences: 28952
Number of extensions: 377881
Number of successful extensions: 848
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)