Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30601.Seq
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   119   2e-27
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    31   0.53 
AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4 ...    30   1.2  
AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin pro...    30   1.2  
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    28   3.7  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        28   3.7  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  119 bits (286), Expect = 2e-27
 Identities = 50/76 (65%), Positives = 67/76 (88%)
 Frame = +3

Query: 27  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 206
           +Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F  V
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64

Query: 207 XIRVTVKGGGHVAQVY 254
            IR+ V GGGHVAQ+Y
Sbjct: 65  DIRIRVSGGGHVAQIY 80



 Score =  106 bits (254), Expect = 1e-23
 Identities = 47/63 (74%), Positives = 56/63 (88%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           +RQA++KAL+A+Y KYVDE SK+E+K+I   YD+SLLVADPRR E KKFGGPGARARYQK
Sbjct: 82  VRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQK 141

Query: 437 SYR 445
           SYR
Sbjct: 142 SYR 144


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 302 YVDEASKKEIKDILVQYDRSLLVADPRRCE 391
           + DE  +KE+ D+  QYDRS+ + D  R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180


>AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4
           protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -1

Query: 242 YMTTTLDCHSDXNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 63
           YMTT+    +  NHR + L E ++  L   +  S  +  + AP   Q    T A     G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207

Query: 62  G 60
           G
Sbjct: 208 G 208


>AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin
           protein 4 protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -1

Query: 242 YMTTTLDCHSDXNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 63
           YMTT+    +  NHR + L E ++  L   +  S  +  + AP   Q    T A     G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207

Query: 62  G 60
           G
Sbjct: 208 G 208


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 236 TTTLDCHSDXNHREFFLAEQKD-RF--LKFVLQQSG 138
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 236 TTTLDCHSDXNHREFFLAEQKD-RF--LKFVLQQSG 138
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 21  TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 362 LLVADPRRCEPKKFGGPGARARY 430
           LL  DPR+ E  K   PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387


>Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical protein
            F16D3.4 protein.
          Length = 1232

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +3

Query: 99   MLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTVKGGG 236
            ++ +   P+D +  R + ++L+ P+L LG E +  + + + V  GG
Sbjct: 1004 LMNIYSEPMDFISDRTV-FQLK-PLLDLGSEYYEQLILGIVVSAGG 1047


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,388,782
Number of Sequences: 27780
Number of extensions: 267749
Number of successful extensions: 587
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)