Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30598.Seq
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 156 4e-39
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 75 1e-14
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 71 2e-13
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 68 1e-12
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 68 1e-12
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 66 4e-12
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 63 4e-11
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 60 4e-10
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 60 4e-10
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 58 2e-09
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 57 4e-09
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 56 8e-09
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 51 2e-07
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 46 9e-06
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 45 2e-05
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 44 2e-05
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 41 2e-04
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 41 3e-04
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 39 0.001
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 36 0.005
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 30 0.36
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 29 1.1
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 29 1.1
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 28 1.4
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 1.9
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 27 3.3
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 4.4
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 26 5.8
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 26 7.7
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.7
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 26 7.7
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 7.7
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 7.7
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 7.7
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 156 bits (378), Expect = 4e-39
Identities = 71/102 (69%), Positives = 84/102 (82%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRG MR VEFKVV+ P F IV+ DT+IH +GEPI RE+EE +L VGYDDIGGCR+Q+
Sbjct: 174 VRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEVGYDDIGGCRRQM 233
Query: 690 AQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
AQI+E+VELPLRHP LFK+IG+KP GILMYG GTGKTL+A
Sbjct: 234 AQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMA 275
Score = 95.9 bits (228), Expect = 6e-21
Identities = 43/100 (43%), Positives = 63/100 (63%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + IVL+D+ D R+ D+V+I PCP +KY +R+ +L
Sbjct: 78 VVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVL 137
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGA 522
P+ D+VEGLTG+LF+VYLKPYF+EAYRPI + D F G+
Sbjct: 138 PLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGS 177
Score = 88.6 bits (210), Expect = 1e-18
Identities = 41/68 (60%), Positives = 53/68 (77%)
Frame = +2
Query: 53 NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 232
N D S +D +TAILR+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++K
Sbjct: 21 NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80
Query: 233 GKRRKETV 256
GKRRK+TV
Sbjct: 81 GKRRKDTV 88
Score = 53.2 bits (122), Expect = 4e-08
Identities = 26/65 (40%), Positives = 39/65 (60%)
Frame = +3
Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTG 800
RE E N V ++DIGG + +++E V++P+ + F GV P G+L +G GTG
Sbjct: 485 RETVVEVPN-VRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTG 543
Query: 801 KTLIA 815
KTL+A
Sbjct: 544 KTLLA 548
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 75.4 bits (177), Expect = 1e-14
Identities = 33/71 (46%), Positives = 47/71 (66%)
Frame = +3
Query: 603 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMY 782
D +P+ + + Y DIGG Q+ +IKE VELPL HP L++ +G+KP G+++Y
Sbjct: 172 DTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILY 231
Query: 783 GAAGTGKTLIA 815
GA GTGKTL+A
Sbjct: 232 GAPGTGKTLLA 242
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 70.9 bits (166), Expect = 2e-13
Identities = 28/53 (52%), Positives = 42/53 (79%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
Y+ +GG KQ+ +IKE++ELP++HP LF+++G+ GIL+YG GTGKTL+A
Sbjct: 144 YEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLA 196
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 68.1 bits (159), Expect = 1e-12
Identities = 28/55 (50%), Positives = 40/55 (72%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
V Y D+GGC++Q+ +++E+VELPL P F +G+ P GI++YG GTGKTL A
Sbjct: 176 VTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCA 230
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 68.1 bits (159), Expect = 1e-12
Identities = 25/55 (45%), Positives = 42/55 (76%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
+ + +GG +Q+ +++E++ELPL++P LF +G+KP G+L+YG GTGKTL+A
Sbjct: 129 ISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 183
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 66.5 bits (155), Expect = 4e-12
Identities = 27/56 (48%), Positives = 41/56 (73%)
Frame = +3
Query: 645 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLI 812
+AV + IGG + Q+AQI+++VELP ++P LFK + P G+L+YG GTGKT++
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMV 329
Score = 53.2 bits (122), Expect = 4e-08
Identities = 28/65 (43%), Positives = 38/65 (58%)
Frame = +3
Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTG 800
RE E+ N V + DIGG + ++KE VE PL H F +GV+P G+L+YG G
Sbjct: 536 REFMMESPN-VHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCS 594
Query: 801 KTLIA 815
KT+ A
Sbjct: 595 KTITA 599
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 63.3 bits (147), Expect = 4e-11
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIAPCC 824
Y DIGG KQ+ ++ E + LP++ F+ +GVKP G LM+G GTGKTL+A C
Sbjct: 184 YSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARAC 239
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 60.1 bits (139), Expect = 4e-10
Identities = 25/54 (46%), Positives = 36/54 (66%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLI 812
V Y D+GG Q +++E VELPL L++ IG+ P G+L+YG GTGKT++
Sbjct: 131 VSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTML 184
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 60.1 bits (139), Expect = 4e-10
Identities = 26/55 (47%), Positives = 38/55 (69%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
V +DDIGG + +++ ++LPL+ P LF G+KP G+L+YG GTGKTL+A
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLA 705
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 57.6 bits (133), Expect = 2e-09
Identities = 23/57 (40%), Positives = 39/57 (68%)
Frame = +3
Query: 645 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
+++ ++ +GG + Q+KEMV LPL +P +F+ ++P G+L +G GTGKTL+A
Sbjct: 261 SSLSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMA 317
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 56.8 bits (131), Expect = 4e-09
Identities = 27/73 (36%), Positives = 42/73 (57%)
Frame = +3
Query: 597 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGIL 776
H D + I+ + + ++ IGG + Q+KEMV LPL +P +F + + P G+L
Sbjct: 351 HIDEKTIRSTDPFANRENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVL 410
Query: 777 MYGAAGTGKTLIA 815
+G GTGKTL+A
Sbjct: 411 FHGPPGTGKTLMA 423
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 55.6 bits (128), Expect = 8e-09
Identities = 22/66 (33%), Positives = 40/66 (60%)
Frame = +3
Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGT 797
K E E + + DIGG + ++ E+V +P++HP +++ G+ P G+L++G G
Sbjct: 160 KAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGC 219
Query: 798 GKTLIA 815
GKT++A
Sbjct: 220 GKTMLA 225
Score = 47.6 bits (108), Expect = 2e-06
Identities = 18/69 (26%), Positives = 40/69 (57%)
Frame = +3
Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGA 788
+P + E + V +++IG + +++ + P++ P L++++G+ G+L++G
Sbjct: 475 QPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGP 534
Query: 789 AGTGKTLIA 815
G GKTL+A
Sbjct: 535 PGCGKTLLA 543
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 50.8 bits (116), Expect = 2e-07
Identities = 26/55 (47%), Positives = 33/55 (60%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
V +DDI G +KE V LP++ P LF G KP GIL+YG GTGK+ +A
Sbjct: 126 VRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPGTGKSYLA 179
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 45.6 bits (103), Expect = 9e-06
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIG--VKPHGGILMYGAAGTGKTLIA 815
V +DDIGG + + Q+ + V PL++P +F G + G+L+YG G GKT++A
Sbjct: 86 VSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLA 142
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 44.8 bits (101), Expect = 2e-05
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = +3
Query: 630 EEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTL 809
EE A+N V + D+ G + +++E+V+ LR P+ F +G K G+L+ G GTGKT+
Sbjct: 258 EERAIN-VRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTM 315
Query: 810 IA 815
+A
Sbjct: 316 LA 317
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
V +DDI G +KE V P P LF+ + +P G+L++G GTGKT++A
Sbjct: 456 VHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPGTGKTMLA 509
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/71 (23%), Positives = 42/71 (59%)
Frame = +3
Query: 603 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMY 782
D P++ + + +++ + DI G ++ +++++E P+++ ++K ++ GIL++
Sbjct: 587 DFVPLQLRKAKFVKSSIRWIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLF 646
Query: 783 GAAGTGKTLIA 815
G G GKT +A
Sbjct: 647 GYPGCGKTYLA 657
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 40.7 bits (91), Expect = 3e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
V + DI G +KE V P P LF+ + +P G+L++G GTGKT++A
Sbjct: 376 VYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLR-EPVQGMLLFGPPGTGKTMLA 429
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
+ + D+ G + +I E V+ L++P ++ +G K G ++ G GTGKTL+A
Sbjct: 293 IKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLA 346
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 36.3 bits (80), Expect = 0.005
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 666 IGGCRKQLAQI-KEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
IGG + + I + L P + + +G+ GIL+YG GTGKTLIA
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIA 321
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 30.3 bits (65), Expect = 0.36
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 548 DHFELDGAHAPAD-LKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTRF 384
DH L +H PA+ LK I A++ G T +PV P+ ++G + TRF
Sbjct: 355 DHCYLQLSHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRF 410
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 421 QLNHQLAVCGLV---FHISLKDTERWI 350
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 421 QLNHQLAVCGLV---FHISLKDTERWI 350
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 78 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 191
L + R + DP ++ + Q + T+SWH FH +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 391 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 281
LV + LKD WI + + E F G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 27 FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 200
F+++N K KW++ A+ P S + + PT+S + + SA TT +RP S
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342
Query: 201 NS 206
S
Sbjct: 343 RS 344
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 576 VAPDTVIHCDGEPIKREEEEEALNAVGYDD 665
V PD + D E I+REEE++A A ++
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEE 229
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 391 LVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLRARCNGF 248
L FH ++ D W PH+ + G F H + +G + R GF
Sbjct: 177 LGFHPNVGDYFDWYPHRPNHFGGKFDGHSRGRGAGRGGFCGRHGRGGF 224
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 720 LRHPSLFKAIGVKPHGGILMYGAAGTGKT 806
LR+ + G+ G L+YG G+GKT
Sbjct: 228 LRNSQWYDTRGIPYRRGYLLYGPPGSGKT 256
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 99 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRAN 239
SSV S S ++M++ + +F+ S+ +SSV T + S +N
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSN 375
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 720 LRHPSLFKAIGVKPHGGILMYGAAG 794
L+ L ++G+KP+ +LM G AG
Sbjct: 50 LKDDVLLGSVGIKPNATLLMMGTAG 74
>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 812 NECFSGTSRPIHENAAVR 759
N CF+GT P++ N+A+R
Sbjct: 207 NTCFNGTQYPVNCNSALR 224
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 77 PD-DLSTAILRRKDRPNRLIVEEAVSD 154
PD D + + + RK+ PNRL++ A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +2
Query: 50 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 208
L +A N + L+T +RK + N ++ +A ++ N+ +++ A E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,525,483
Number of Sequences: 5004
Number of extensions: 72001
Number of successful extensions: 261
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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