Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30598.Seq
(847 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 165 2e-41
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 165 2e-41
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 165 3e-41
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 74 1e-13
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 74 1e-13
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 72 6e-13
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 72 6e-13
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 71 1e-12
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 71 1e-12
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 71 1e-12
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 67 2e-11
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 67 2e-11
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 67 2e-11
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 66 2e-11
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 58 7e-09
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 56 4e-08
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 54 9e-08
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 54 1e-07
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 54 1e-07
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 54 2e-07
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 53 3e-07
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 52 5e-07
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 52 5e-07
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 52 6e-07
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 51 8e-07
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 51 1e-06
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 50 2e-06
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 50 2e-06
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 50 3e-06
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 48 6e-06
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 48 8e-06
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 48 8e-06
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 48 1e-05
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 47 1e-05
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 46 3e-05
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 46 3e-05
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 46 4e-05
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 46 4e-05
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 46 4e-05
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 45 6e-05
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 45 6e-05
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 44 1e-04
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 44 1e-04
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 44 1e-04
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 44 1e-04
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 44 1e-04
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 44 2e-04
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 42 5e-04
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 42 7e-04
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 41 9e-04
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 39 0.004
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 38 0.011
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 36 0.034
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 34 0.14
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 33 0.32
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 1.3
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 30 1.7
At2g05080.1 68415.m00530 hypothetical protein low similarity to ... 29 2.9
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 29 5.1
At4g28070.1 68417.m04026 AFG1-like ATPase family protein contain... 28 9.0
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 165 bits (402), Expect = 2e-41
Identities = 74/102 (72%), Positives = 90/102 (88%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+KRE+EE L+ VGYDD+GG RKQ+
Sbjct: 158 VRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEER-LDEVGYDDVGGVRKQM 216
Query: 690 AQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
AQI+E+VELPLRHP LFK+IGVKP GIL+YG G+GKTLIA
Sbjct: 217 AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258
Score = 117 bits (282), Expect = 9e-27
Identities = 51/99 (51%), Positives = 66/99 (66%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F G
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRG 160
Score = 93.9 bits (223), Expect = 1e-19
Identities = 42/65 (64%), Positives = 55/65 (84%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D+K+ D STAIL RK PNRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67
Query: 242 RKETV 256
RK+TV
Sbjct: 68 RKDTV 72
Score = 57.6 bits (133), Expect = 1e-08
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +3
Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTG 800
RE E N V ++DIGG +++E V+ P+ HP F+ G+ P G+L YG G G
Sbjct: 468 RETVVEVPN-VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 526
Query: 801 KTLIA 815
KTL+A
Sbjct: 527 KTLLA 531
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 165 bits (402), Expect = 2e-41
Identities = 74/102 (72%), Positives = 90/102 (88%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRGGMR++EFKV+ETDP+ +C+VAPDT I C+GEPIKRE+EE L+ VGYDD+GG RKQ+
Sbjct: 159 VRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIKREDEER-LDEVGYDDVGGVRKQM 217
Query: 690 AQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
AQI+E+VELPLRHP LFK+IGVKP GIL+YG G+GKTLIA
Sbjct: 218 AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 259
Score = 112 bits (269), Expect = 3e-25
Identities = 47/99 (47%), Positives = 65/99 (65%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYG RVHIL
Sbjct: 63 LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
P+DD++EG++GN+F+ YLKPYF+EAYRP+ + D F G
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRG 161
Score = 84.2 bits (199), Expect = 1e-16
Identities = 40/66 (60%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Frame = +2
Query: 62 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
+D+K + D STAIL +K NRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK
Sbjct: 8 SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67
Query: 239 RRKETV 256
+RK+TV
Sbjct: 68 KRKDTV 73
Score = 57.6 bits (133), Expect = 1e-08
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +3
Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTG 800
RE E N V ++DIGG +++E V+ P+ HP F+ G+ P G+L YG G G
Sbjct: 469 RETVVEVPN-VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 527
Query: 801 KTLIA 815
KTL+A
Sbjct: 528 KTLLA 532
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 165 bits (401), Expect = 3e-41
Identities = 74/102 (72%), Positives = 90/102 (88%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+KRE+EE L+ VGYDD+GG RKQ+
Sbjct: 158 VRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEER-LDDVGYDDVGGVRKQM 216
Query: 690 AQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
AQI+E+VELPLRHP LFK+IGVKP GIL+YG G+GKTLIA
Sbjct: 217 AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258
Score = 117 bits (282), Expect = 9e-27
Identities = 51/99 (51%), Positives = 66/99 (66%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F G
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRG 160
Score = 96.7 bits (230), Expect = 2e-20
Identities = 44/65 (67%), Positives = 56/65 (86%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D+KS D STAIL RK PNRL+V+EA++DDNSVV+L A ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67
Query: 242 RKETV 256
RK+TV
Sbjct: 68 RKDTV 72
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +3
Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTG 800
RE E N V ++DIGG +++E V+ P+ HP F+ G+ P G+L YG G G
Sbjct: 468 RETVVEVPN-VSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 526
Query: 801 KTLIA 815
KTL+A
Sbjct: 527 KTLLA 531
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 73.7 bits (173), Expect = 1e-13
Identities = 33/75 (44%), Positives = 48/75 (64%)
Frame = +3
Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGG 770
++ + +P+ + E Y DIGG Q+ +IKE VELPL HP L++ IG+KP G
Sbjct: 165 ILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKG 224
Query: 771 ILMYGAAGTGKTLIA 815
+++YG GTGKTL+A
Sbjct: 225 VILYGEPGTGKTLLA 239
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 73.7 bits (173), Expect = 1e-13
Identities = 33/75 (44%), Positives = 48/75 (64%)
Frame = +3
Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGG 770
++ + +P+ + E Y DIGG Q+ +IKE VELPL HP L++ IG+KP G
Sbjct: 165 ILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKG 224
Query: 771 ILMYGAAGTGKTLIA 815
+++YG GTGKTL+A
Sbjct: 225 VILYGEPGTGKTLLA 239
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 71.7 bits (168), Expect = 6e-13
Identities = 31/55 (56%), Positives = 40/55 (72%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
V Y+DIGGC Q +I+E VELPL H L+K IG+ P G+L+YG GTGKT++A
Sbjct: 152 VSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 206
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 71.7 bits (168), Expect = 6e-13
Identities = 28/55 (50%), Positives = 42/55 (76%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
V Y+D+GGC++Q+ +++E+VELP+ HP F +G+ P G+L YG GTGKTL+A
Sbjct: 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLA 219
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 70.9 bits (166), Expect = 1e-12
Identities = 28/53 (52%), Positives = 40/53 (75%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
Y DIGGC++Q+ +I+E+VELP+ HP F +G+ P G+L YG G+GKTL+A
Sbjct: 204 YSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVA 256
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 70.5 bits (165), Expect = 1e-12
Identities = 28/53 (52%), Positives = 42/53 (79%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
YD IGG +Q+ +IKE++ELP++HP LF+++G+ G+L+YG GTGKTL+A
Sbjct: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLA 212
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 70.5 bits (165), Expect = 1e-12
Identities = 28/53 (52%), Positives = 42/53 (79%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
YD IGG +Q+ +IKE++ELP++HP LF+++G+ G+L+YG GTGKTL+A
Sbjct: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLA 212
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 66.9 bits (156), Expect = 2e-11
Identities = 28/69 (40%), Positives = 43/69 (62%)
Frame = +3
Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGA 788
+P+ E + Y +GG Q+ +++E +ELPL +P LF +G+KP G+L+YG
Sbjct: 122 DPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGP 181
Query: 789 AGTGKTLIA 815
GTGKTL+A
Sbjct: 182 PGTGKTLLA 190
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 66.9 bits (156), Expect = 2e-11
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIAPCC 824
Y+DIGG KQ+ ++ E + LP+ H F+ +GV+P G+L+YG GTGKTL+A C
Sbjct: 170 YNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARAC 225
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 66.9 bits (156), Expect = 2e-11
Identities = 28/69 (40%), Positives = 43/69 (62%)
Frame = +3
Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGA 788
+P+ E + Y +GG Q+ +++E +ELPL +P LF +G+KP G+L+YG
Sbjct: 122 DPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGP 181
Query: 789 AGTGKTLIA 815
GTGKTL+A
Sbjct: 182 PGTGKTLLA 190
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 66.5 bits (155), Expect = 2e-11
Identities = 26/56 (46%), Positives = 39/56 (69%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIAPCC 824
Y+DIGG KQ+ ++ E + LP+ H F+ +G++P G+L+YG GTGKTL+A C
Sbjct: 169 YNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARAC 224
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 58.0 bits (134), Expect = 7e-09
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
+ +DDIGG + + +KEMV PL +P F + + P G+L+ G GTGKTLIA
Sbjct: 378 INFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPPGTGKTLIA 432
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 55.6 bits (128), Expect = 4e-08
Identities = 25/55 (45%), Positives = 34/55 (61%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
V ++D+GG + Q+ E VE P +H FK IG +P GILM+G G KTL+A
Sbjct: 721 VNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMA 775
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/50 (34%), Positives = 33/50 (66%)
Frame = +3
Query: 666 IGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
+GG K+ A ++++++ SL ++G++P G+L++G GTGKT +A
Sbjct: 387 LGGLSKEYAILRDIIDSSSIKNSL-SSLGLRPTKGVLIHGPPGTGKTSLA 435
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 54.4 bits (125), Expect = 9e-08
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
V +DD+GG I + V+LPL H LF + G++ G+L+YG GTGKTL+A
Sbjct: 655 VKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLA 708
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/55 (47%), Positives = 36/55 (65%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
V + DIG + ++E+V LPLR P LFK +KP GIL++G GTGKT++A
Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMMA 465
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPHGGILMYGAAGTGKTLIA 815
V +DDIG +KE+V LPL+ P LF K KP GIL++G GTGKT++A
Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGTGKTMLA 1015
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 53.6 bits (123), Expect = 2e-07
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPHGGILMYGAAGTGKTLIA 815
V +DDIG K +KE+V LPL+ P LF K KP GIL++G GTGKT++A
Sbjct: 817 VTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPPGTGKTMLA 872
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/62 (41%), Positives = 35/62 (56%)
Frame = +3
Query: 630 EEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTL 809
E E + D GG +K L +++ V P+ +P FK IGVKP GIL +G G GKT
Sbjct: 223 EVEGTKGPTFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTK 282
Query: 810 IA 815
+A
Sbjct: 283 LA 284
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
V +DD+GG Q + P++ P ++KA GV G L+YG G GKTLIA
Sbjct: 525 VKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIA 579
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 52.0 bits (119), Expect = 5e-07
Identities = 27/60 (45%), Positives = 38/60 (63%)
Frame = +3
Query: 636 EALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
E +N V + DIG + ++E+V LPLR P LF +KP GIL++G GTGKT++A
Sbjct: 514 EEIN-VTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLA 572
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 52.0 bits (119), Expect = 5e-07
Identities = 27/60 (45%), Positives = 38/60 (63%)
Frame = +3
Query: 636 EALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
E +N V + DIG + ++E+V LPLR P LF +KP GIL++G GTGKT++A
Sbjct: 509 EEIN-VTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLA 567
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPHGGILMYGAAGTGKTLIA 815
V +DDIG +KE+V LP + P LF K KP GIL++G +GTGKT++A
Sbjct: 732 VTFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLFGPSGTGKTMLA 787
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 51.2 bits (117), Expect = 8e-07
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPHGGILMYGAAGTGKTLIA 815
V + DIG +KE+V LPL+ P LF K KP GIL++G GTGKT++A
Sbjct: 947 VSFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTMLA 1002
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/68 (36%), Positives = 37/68 (54%)
Frame = +3
Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGA 788
E I + E G+D + G +KE+V +PL +P F +G+ P GIL++G
Sbjct: 702 EYIGGSDSESGKAFEGWDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPRGILLHGH 761
Query: 789 AGTGKTLI 812
GTGKTL+
Sbjct: 762 PGTGKTLV 769
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/66 (34%), Positives = 40/66 (60%)
Frame = +3
Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGT 797
K E + V + D+ G + + +++E+V+ L++P LF +G+KP G+L+ G G
Sbjct: 416 KAEARVDGSTGVKFADVAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLLEGPPGC 474
Query: 798 GKTLIA 815
GKTL+A
Sbjct: 475 GKTLVA 480
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/55 (36%), Positives = 35/55 (63%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
V +DD+GG + ++++ VE P++H + F +G+ P GIL++G G KT +A
Sbjct: 283 VTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLA 337
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +3
Query: 663 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKT 806
+IGG + L ++E++ P R+P + +G+K G+L+YG GTGKT
Sbjct: 23 EIGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKT 70
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPHGGILMYGAAGTGKTLIA 815
V +DDIG + E+V LP+R P LF + ++P GIL++G GTGKTL+A
Sbjct: 147 VKFDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLFGPPGTGKTLLA 202
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 48.4 bits (110), Expect = 6e-06
Identities = 25/57 (43%), Positives = 36/57 (63%)
Frame = +3
Query: 645 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
N + D+ GC +++E+VE L++PS F +G K GIL+ GA GTGKTL+A
Sbjct: 357 NVKTFKDVKGCDDAKQELEEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLA 412
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 48.0 bits (109), Expect = 8e-06
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLI 812
+G++D+GG IKEM+ELP + P +F ++ +L+YG G GKT I
Sbjct: 841 LGWEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPGCGKTHI 894
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 48.0 bits (109), Expect = 8e-06
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPHGGILMYGAAGTGKTLIA 815
V ++DIG + E+V LP+R P LF + ++P GIL++G GTGKTL+A
Sbjct: 348 VKFEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPGTGKTLLA 403
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
V +DD+ G + ++E V LPL P F+ I +P G+LM+G GTGKTL+A
Sbjct: 236 VRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLA 289
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/66 (37%), Positives = 36/66 (54%)
Frame = +3
Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGT 797
K + + E V +DD+ G + E+VE L+ P F A+G K G+L+ G GT
Sbjct: 213 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVLLIGPPGT 271
Query: 798 GKTLIA 815
GKTL+A
Sbjct: 272 GKTLLA 277
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIG--VKPHGGILMYGAAGTGKTLIA 815
V + IGG + E+V LPL+ P LF A G + P G+L+YG GTGKT++A
Sbjct: 84 VEFGSIGGLESIKQALYELVILPLKRPELF-AYGKLLGPQKGVLLYGPPGTGKTMLA 139
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = +3
Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGT 797
K + + E V +DD+ G + E+VE L+ P F A+G + G+L+ G GT
Sbjct: 206 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVLLVGPPGT 264
Query: 798 GKTLIA 815
GKTL+A
Sbjct: 265 GKTLLA 270
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIG--VKPHGGILMYGAAGTGKTLIA 815
V + IGG + E+V LPL+ P LF A G + P G+L+YG GTGKT++A
Sbjct: 81 VEFGSIGGLETIKQALYELVILPLKRPELF-AYGKLLGPQKGVLLYGPPGTGKTMLA 136
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/55 (36%), Positives = 35/55 (63%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
+ + D+ G + +++E+VE LR+P + +G +P G+L+ G GTGKTL+A
Sbjct: 322 ITFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPRGVLLVGLPGTGKTLLA 375
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +3
Query: 630 EEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTL 809
++ + N + + D+ GC + +I E V L++P ++ +G K G L+ G GTGKTL
Sbjct: 317 DKNSKNKIYFKDVAGCEEAKQEIMEFVHF-LQNPKKYEDLGAKIPKGALLVGPPGTGKTL 375
Query: 810 IA 815
+A
Sbjct: 376 LA 377
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 45.2 bits (102), Expect = 6e-05
Identities = 23/66 (34%), Positives = 37/66 (56%)
Frame = +3
Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGT 797
K + + E + ++D+ G + +E+VE L+ P F A+G K G+L+ G GT
Sbjct: 209 KAKFQMEPNTGITFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPKGVLLTGPPGT 267
Query: 798 GKTLIA 815
GKTL+A
Sbjct: 268 GKTLLA 273
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +3
Query: 630 EEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTL 809
++ + N + + D+ GC + +I E V L++P ++ +G K G L+ G GTGKTL
Sbjct: 312 DKHSKNKIYFKDVAGCDEAKQEIMEFVHF-LKNPKKYEDLGAKIPKGALLVGPPGTGKTL 370
Query: 810 IA 815
+A
Sbjct: 371 LA 372
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/55 (34%), Positives = 35/55 (63%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
+ + D+ G + +++E+VE L++P + +G +P G+L+ G GTGKTL+A
Sbjct: 326 ITFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPRGVLLVGLPGTGKTLLA 379
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/54 (42%), Positives = 30/54 (55%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLI 812
V +DDI G + EMV PL P +FK P G+L++G GTGKT+I
Sbjct: 7 VRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCR-SPGKGLLLFGPPGTGKTMI 59
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/55 (34%), Positives = 34/55 (61%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
+ ++ I G +KE V +P+++P+ F + + P GIL++G GTGKT++A
Sbjct: 109 IKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLA 162
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/55 (34%), Positives = 34/55 (61%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
+ ++ I G +KE V +P+++P+ F + + P GIL++G GTGKT++A
Sbjct: 100 IKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLA 153
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/66 (33%), Positives = 38/66 (57%)
Frame = +3
Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGT 797
K + +E V + D+ G + +++E+V+ L++P + A+G K G L+ G GT
Sbjct: 248 KSKFQEVPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGT 306
Query: 798 GKTLIA 815
GKTL+A
Sbjct: 307 GKTLLA 312
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/66 (33%), Positives = 38/66 (57%)
Frame = +3
Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGT 797
K + +E V + D+ G + +++E+V+ L++P + A+G K G L+ G GT
Sbjct: 236 KSKFQEVPETGVTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGT 294
Query: 798 GKTLIA 815
GKTL+A
Sbjct: 295 GKTLLA 300
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
V + D+ G K +++E+V+ H +++ GVK GGIL+ G G GKTL+A
Sbjct: 407 VKFTDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVKIPGGILLCGPPGVGKTLLA 460
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +3
Query: 648 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
+V +DD+ G + EMV LP + LF + +P G+L++G G GKT++A
Sbjct: 212 SVKWDDVAGLNGAKQALLEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLA 266
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 41.1 bits (92), Expect = 9e-04
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +3
Query: 624 EEEEEALNA-VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTG 800
EE + ++++ + D+ G + A+++E+V LR P F +G K G+L+ G GTG
Sbjct: 214 EEVQPSMDSSTKFSDVKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTG 272
Query: 801 KTLIA 815
KT++A
Sbjct: 273 KTMLA 277
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = +3
Query: 594 IHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGI 773
+ P K+ + VG+DD+ G ++ E+V L+ +K +G + G+
Sbjct: 314 LSASNSPAKKRRSKNP--TVGFDDVEGVDSAKDELVEIVSC-LQGSINYKKLGARLPRGV 370
Query: 774 LMYGAAGTGKTLIA 815
L+ G GTGKTL+A
Sbjct: 371 LLVGPPGTGKTLLA 384
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/60 (33%), Positives = 34/60 (56%)
Frame = +3
Query: 636 EALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
E V +DD G +++E+V + L++ F+ G+ G+L++G GTGKTL+A
Sbjct: 308 EEKTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLA 366
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 35.9 bits (79), Expect = 0.034
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
+ + D+ G ++E V LP++ P F +P L+YG GTGK+ +A
Sbjct: 129 IKWSDVAGLESAKQALQEAVILPVKFPQFFTGKR-RPWRAFLLYGPPGTGKSYLA 182
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 693 QIKEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
+I E+V L++P F+ +G + G+L+ G GTGKT +A
Sbjct: 435 EINEVVAF-LQNPKAFQEMGARAPRGVLIVGERGTGKTSLA 474
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 666 IGGCRKQLAQI-KEMVELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLIA 815
IGG + A I + + P + +G+K G+L++G GTGKTL+A
Sbjct: 217 IGGLGAEFADIFRRAFASRVFPPHVTSRLGIKHVKGMLLFGPPGTGKTLMA 267
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1
Query: 214 TTEELKLLHFGL*KCHD*VVIAD 146
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 455
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 369 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 274
RT S+ +++ HTK++ HN + L+R +I
Sbjct: 28 RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59
>At2g05080.1 68415.m00530 hypothetical protein low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 1238
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 642 LNAVGYDDIGGCRKQLAQIKEM-VELPLRHPSLFKAIGVKPHGGILMYGAAGTGKTLI 812
L+ GYD +K IK++ +E + ++ A+ G +YG GTGKT +
Sbjct: 830 LDEKGYDRESETKKHADSIKKLTLEQKSVYDNIIGAVNENVGGVFFVYGFGGTGKTFL 887
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 720 LRHPSLFKAIGVKPHGGILMYGAAGTGKT 806
+R +K +G G L+YG GTGKT
Sbjct: 231 IRRKDFYKRVGKPWKRGYLLYGPPGTGKT 259
>At4g28070.1 68417.m04026 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 464
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 753 VKPHGGILMYGAAGTGKTLI 812
V P G+ +YG GTGKT++
Sbjct: 130 VSPVKGLYLYGGVGTGKTML 149
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,032,343
Number of Sequences: 28952
Number of extensions: 405157
Number of successful extensions: 1338
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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