Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30596.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy...   120   7e-28
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id...   120   7e-28
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id...   120   7e-28
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy...   119   2e-27
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)         118   5e-27
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)          74   8e-14
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri...    74   1e-13
At1g18390.1 68414.m02297 protein kinase family protein contains ...    29   3.0  

>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  120 bits (290), Expect = 7e-28
 Identities = 56/70 (80%), Positives = 64/70 (91%)
 Frame = -2

Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 286 IVVNLTGRLN 257
           IVV L GRLN
Sbjct: 61  IVVELNGRLN 70



 Score =  103 bits (248), Expect = 9e-23
 Identities = 46/60 (76%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
 Frame = -1

Query: 257 QCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 81
           +CGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 71  KCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  120 bits (290), Expect = 7e-28
 Identities = 56/70 (80%), Positives = 64/70 (91%)
 Frame = -2

Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 286 IVVNLTGRLN 257
           IVV L GRLN
Sbjct: 61  IVVELNGRLN 70



 Score =  103 bits (248), Expect = 9e-23
 Identities = 46/60 (76%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
 Frame = -1

Query: 257 QCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 81
           +CGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 71  KCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  120 bits (290), Expect = 7e-28
 Identities = 56/70 (80%), Positives = 64/70 (91%)
 Frame = -2

Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
           MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 286 IVVNLTGRLN 257
           IVV L GRLN
Sbjct: 61  IVVELNGRLN 70



 Score =  103 bits (248), Expect = 9e-23
 Identities = 46/60 (76%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
 Frame = -1

Query: 257 QCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 81
           +CGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 71  KCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  119 bits (286), Expect = 2e-27
 Identities = 55/70 (78%), Positives = 63/70 (90%)
 Frame = -2

Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
           MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 286 IVVNLTGRLN 257
           IVV L GRLN
Sbjct: 61  IVVELNGRLN 70



 Score =  102 bits (244), Expect = 3e-22
 Identities = 45/60 (75%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
 Frame = -1

Query: 257 QCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 81
           +CGVISPRFDV + +IE WT  LLPSRQFG++VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 71  KCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 
          Length = 136

 Score =  118 bits (283), Expect = 5e-27
 Identities = 55/71 (77%), Positives = 62/71 (87%)
 Frame = -2

Query: 466 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 287
           MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 286 IVVNLTGRLNN 254
           IVV L GRLNN
Sbjct: 67  IVVELNGRLNN 77



 Score =   99 bits (238), Expect = 1e-21
 Identities = 43/59 (72%), Positives = 53/59 (89%), Gaps = 1/59 (1%)
 Frame = -1

Query: 254 CGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 81
           CGVISPR+D+ + +IE WT  LLPSRQFGY+VLTTS GIMDHEEAR+K++GGK+LGFF+
Sbjct: 78  CGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 136


>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 
          Length = 129

 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 33/66 (50%), Positives = 48/66 (72%)
 Frame = -2

Query: 451 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 272
           +L+DAL++I NAEKRGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64

Query: 271 TGRLNN 254
            GR+N+
Sbjct: 65  QGRVND 70



 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 29/62 (46%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
 Frame = -1

Query: 266 QTKQCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILG 90
           +   C  ++ R DV  N+I ++T   LP+RQ+GY+V+TT  GI+DHEEA ++++GG++LG
Sbjct: 67  RVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLG 126

Query: 89  FF 84
           FF
Sbjct: 127 FF 128


>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
           ribosomal protein S15a - Brassica napus,PIR2:S20945
          Length = 129

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 32/66 (48%), Positives = 48/66 (72%)
 Frame = -2

Query: 451 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 272
           +L+DAL++I NAE+RGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64

Query: 271 TGRLNN 254
            GR+N+
Sbjct: 65  QGRVND 70



 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 29/63 (46%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
 Frame = -1

Query: 266 QTKQCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILG 90
           +   C  ++ R DV   +IE++T   LP+RQ+GY+V+TT  GI+DHEEA ++++GG++LG
Sbjct: 67  RVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLG 126

Query: 89  FFF 81
           FF+
Sbjct: 127 FFY 129


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 388 IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 281
           +RPC   +   LT +  +G+  E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,251,101
Number of Sequences: 28952
Number of extensions: 260084
Number of successful extensions: 500
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)