Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30595.Seq
         (399 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000498AE3 Cluster: Rab GTPase activating protein; n...    32   3.6  
UniRef50_Q3LWB4 Cluster: Thylakoid preprotein translocase; n=1; ...    32   4.8  
UniRef50_Q6YPI6 Cluster: Putative uncharacterized protein; n=2; ...    31   6.3  
UniRef50_Q87K29 Cluster: Putative uncharacterized protein VPA006...    31   8.3  

>UniRef50_UPI0000498AE3 Cluster: Rab GTPase activating protein; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: Rab GTPase
           activating protein - Entamoeba histolytica HM-1:IMSS
          Length = 604

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 11/39 (28%), Positives = 26/39 (66%)
 Frame = -1

Query: 177 PLNFINLVLLQLNIMVGKLLTHSFTSYLMKVLISSINYY 61
           P+ F+N  +  LNI++ K +T++F SY   + +++++ +
Sbjct: 136 PIQFVNKEVGLLNILINKTMTNNFDSYKYSICLTNLSSF 174


>UniRef50_Q3LWB4 Cluster: Thylakoid preprotein translocase; n=1;
           Bigelowiella natans|Rep: Thylakoid preprotein
           translocase - Bigelowiella natans (Pedinomonas
           minutissima) (Chlorarachnion sp.(strain CCMP 621))
          Length = 487

 Score = 31.9 bits (69), Expect = 4.8
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 210 IVXLSTRNLLTPLN-FINLVLLQLNIMVGKLLTHSFTSYLMKVLISSINYYTPTLQN 43
           I  LST N +   N F    L+ LNI    +L     S +M+VLIS  NY+   LQN
Sbjct: 105 ISQLSTNNFIEFSNSFFIKNLINLNINSLGILPCINASIVMQVLISQTNYFNDLLQN 161


>UniRef50_Q6YPI6 Cluster: Putative uncharacterized protein; n=2;
           Candidatus Phytoplasma asteris|Rep: Putative
           uncharacterized protein - Onion yellows phytoplasma
          Length = 209

 Score = 31.5 bits (68), Expect = 6.3
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -1

Query: 216 VDIVXLSTRNLLTPLNFINLVLLQL-NIMVGKLLTHSFTSYLMKVLISSIN 67
           V +  + T  LL  L F+N+  L+  N +VGKLLT ++   LM VL S IN
Sbjct: 81  VFVFVIVTAFLLPGLGFLNIDDLKTKNPLVGKLLTFNYCLSLMFVLHSFIN 131


>UniRef50_Q87K29 Cluster: Putative uncharacterized protein VPA0069;
           n=7; Vibrio|Rep: Putative uncharacterized protein
           VPA0069 - Vibrio parahaemolyticus
          Length = 153

 Score = 31.1 bits (67), Expect = 8.3
 Identities = 22/70 (31%), Positives = 35/70 (50%)
 Frame = -1

Query: 258 SFXAAXQFNVD*QLVDIVXLSTRNLLTPLNFINLVLLQLNIMVGKLLTHSFTSYLMKVLI 79
           +F +  Q +V  +L ++  L T +  T L +I      L + +  LLTH + S   +V I
Sbjct: 22  TFSSPQQPSVTLKLEELQSLPTTSYTTDLPWIQQSSEFLGVKLSTLLTHVYGSIPEQVDI 81

Query: 78  SSINYYTPTL 49
            S+N Y  TL
Sbjct: 82  GSLNNYHSTL 91


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,896,850
Number of Sequences: 1657284
Number of extensions: 2915985
Number of successful extensions: 5976
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5976
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)