Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30595.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0686 - 5855216-5858263                                           27   4.1  
12_01_0741 + 6649988-6653065                                           27   7.2  
05_01_0608 + 5429901-5429982,5430610-5431058,5436758-5437183,543...    27   7.2  
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935...    26   9.5  
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406...    26   9.5  

>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 183  LTPLNFINLVLLQLNIMVGKL-LTHSFTSYLMKVLISSINYYTPTLQNVC 37
            L  LNF++ + L  N++VG++  ++ F+++     + +I    P L   C
Sbjct: 917  LASLNFLSTLNLSYNMLVGRIPNSYQFSTFSNNSFLGNIGLCGPPLSKQC 966


>12_01_0741 + 6649988-6653065
          Length = 1025

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 183  LTPLNFINLVLLQLNIMVGKL-LTHSFTSYLMKVLISSINYYTPTLQNVCMY 31
            L  LNF++++ L  N++ GK+  +  F+++     + +I    P L   C Y
Sbjct: 913  LASLNFLSILNLSYNMLDGKIPQSLHFSTFSNDSFVGNIGLCGPPLSKQCGY 964


>05_01_0608 +
           5429901-5429982,5430610-5431058,5436758-5437183,
           5437270-5437643,5437655-5438113,5438191-5438361,
           5438442-5438760
          Length = 759

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 1   YILILYNLISVHTNIL*CWSIIINRTNKHFHQIA 102
           Y+  LY + ++ TN+L C+S++   T KH H+ A
Sbjct: 577 YLRDLYRVRAIDTNLLKCYSLL---TWKHVHRKA 607


>07_03_1529 +
           27491963-27492465,27493045-27493154,27493384-27493510,
           27494082-27494430,27494975-27495251,27496236-27496333,
           27498090-27498214,27498270-27498326,27498328-27498370,
           27498581-27498667,27498802-27498882,27499735-27499901,
           27499987-27500098,27500188-27500390,27500473-27500607,
           27501106-27501205
          Length = 857

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 68  LIELISTFIK*LVKECVSSFPTIIF 142
           L+ LIS  +   VKE VS  P I+F
Sbjct: 717 LVALISVIVSFFVKELVSYLPVILF 741


>04_04_0940 -
           29539138-29539626,29540125-29540531,29540631-29540662,
           29540809-29541086,29541164-29542515,29542616-29542874
          Length = 938

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 145 VEYYGWKTTYTLF 107
           VEYYGWK   T+F
Sbjct: 157 VEYYGWKQVTTIF 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,772,154
Number of Sequences: 37544
Number of extensions: 71758
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)