Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30595.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50647| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_26590| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-17)                 27   4.3  
SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_45944| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)                 26   9.8  

>SB_50647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -1

Query: 219 LVDIVXLSTRNLLTPLNF--INLVLLQLNIMVGKLLTHSF 106
           LV IV L +R+L TP+NF  +NL +  + + +     H F
Sbjct: 26  LVVIVVLRSRSLRTPMNFLLVNLAIADMMVAIFMSPRHIF 65


>SB_26590| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-17)
          Length = 391

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -1

Query: 210 IVXLSTRNLLTPLNFINLVLLQLNIMVGKLLTHSFTSYLMKV-LISSINYYTPTLQNVCM 34
           +  +S +N L+P   +   LL  + +VG +    F  YL+   L  S  +Y  T    C 
Sbjct: 53  LAAISYKNTLSPPQVLLCALLFADCLVGVVFLPLFIGYLLSYELFKSCTFYAVTRAAGCF 112

Query: 33  YT 28
            T
Sbjct: 113 TT 114


>SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -1

Query: 213 DIVXLSTRNL--LTPLNFINLV--LLQLNIMVGKLLTHSFTSYLMKVLISSINYYTPTLQ 46
           +IV  +TRN+  L  L  +  +  +L+ N+   K + H F + L ++ +  +N Y    +
Sbjct: 346 NIVREATRNIDHLRDLEVVKQLGNILKTNVRGCKSIGHPFVTQLGRIYLDMLNVYRCLSE 405

Query: 45  NVCM 34
           N+ M
Sbjct: 406 NISM 409


>SB_45944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -1

Query: 159 LVLLQLNIMVGKLLTHSFTSYLMKVLISSINYYTPTLQNV 40
           ++++ + +M  K++T      +MK++++    Y PTL N+
Sbjct: 73  MMMMMMMMMKRKMMTTLLMMKIMKMMMAMSMMYEPTLYNI 112


>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
          Length = 1299

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 104 VKECVSSFPTIIFNCNKTKLIKLRGVSR 187
           V+ C++SF  +  +  + +L++LRG SR
Sbjct: 5   VRVCIASFSRLARSYRRQRLLRLRGESR 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,025,772
Number of Sequences: 59808
Number of extensions: 92850
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)