Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30593.Seq
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 66 6e-12
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa... 31 0.12
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 29 0.64
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 28 1.1
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 28 1.1
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 28 1.1
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 28 1.5
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 28 1.5
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 6.0
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 6.0
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 26 6.0
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 25 7.9
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 65.7 bits (153), Expect = 6e-12
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +3
Query: 270 RMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIG-TENSRPSSAAQC 446
RMAAGL LKN +T+++ K +YQQ W +L +++ +K L +G +E+ SAAQ
Sbjct: 54 RMAAGLALKNAITAREEARKLEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQL 113
Query: 447 VAYVAVAELPVGQWNDLIPIL 509
VA +A EL QW DL+ L
Sbjct: 114 VAAIAAYELATNQWPDLMVTL 134
Score = 57.6 bits (133), Expect = 2e-09
Identities = 30/61 (49%), Positives = 40/61 (65%)
Frame = +2
Query: 509 VENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMRSTEPSNHVRLA 688
V NV Q + LK+ + L+ IGYIC+ + EVL+ +SN ILTA++ G R EP VRLA
Sbjct: 135 VANVGEGQPSALKQHS-LQTIGYICESVSPEVLSAQSNAILTAVVAGARKEEPDAAVRLA 193
Query: 689 A 691
A
Sbjct: 194 A 194
Score = 31.1 bits (67), Expect = 0.16
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +1
Query: 124 QILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGTVKWL 270
+ L +T+SPD N A + L++AA T+F ++ +L+ L ++ ++
Sbjct: 5 EFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYI 53
>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/93 (16%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = +3
Query: 222 QNVVRCPSPRWNSQVARMAAGLQLKNHLTSKDP--TLKQQYQQRWLALAEDVRLYIKENI 395
++ +R P + + LQ+K ++ P TL+ ++ W + D ++++ +
Sbjct: 4 KHTLRLADPSAIDSIISVDEFLQIKEQYDAEQPLITLQTKFNLAWALVRSDSTQHVQQGL 63
Query: 396 LAAIGTENSRPSSAAQCVAYVAVAELPVGQWND 494
P +C+ Y+A++ + Q+ +
Sbjct: 64 SLFCSIYKDSPERRLECLYYIALSHYKLKQYEE 96
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 29.1 bits (62), Expect = 0.64
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = -2
Query: 655 PHAMYDGRKNLITSFC*YFSINILTNVANSLQSRFLFEFSRLDMNNIFYRIGIRSFHCPT 476
PH + +N + FC + + ++N S + L S D+NN+ +RS
Sbjct: 256 PHFYLNDSRNSLNYFCPFSAFEDISNSVRSSCGKRLSPSSNFDLNNLGGDDDLRSESSSD 315
Query: 475 GSSATATYATH 443
SA A+ H
Sbjct: 316 FESAPASILEH 326
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 565 LQSRFLFEFSRLDMNNIFYRIGIRSFHCPTGSSATATYATHC-AAELGRLFSVPIAAN 395
LQS F EF+ + +N ++ ++ +RS C + ++ T + L + SVP++A+
Sbjct: 530 LQSSFTLEFASILVNVLYEQVSLRSVICNSLTALVETNSKVADKLPLDDVISVPVSAS 587
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/70 (22%), Positives = 31/70 (44%)
Frame = -1
Query: 383 YIKSNIFCQSQPSLLILLFKCRIFRSEMIFQLQTSCHPSHLTVPPWRRTSDNILMNVVKF 204
YI N F + +LLF +F +F +Q H +H P + + L+ ++
Sbjct: 11 YIDINFFRNATLDQCLLLFYLSLFSLTNLFLIQKLFHANHTQHPLKKYFGETCLLEYIQI 70
Query: 203 VVAAWSRYLT 174
+++ S L+
Sbjct: 71 ILSIVSAALS 80
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -1
Query: 323 CRIFRSEMIFQLQTSCHPSHLTVPPWRRTSDN 228
C E I QL TSC H +P W D+
Sbjct: 61 CNKNEQEAIIQLLTSCEGDHWLMPDWSSMPDD 92
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/48 (27%), Positives = 31/48 (64%)
Frame = +2
Query: 41 KNRIESVFCNINLRIVKQCTQKQH*RLYKYLRRQFHLIEMNWKQQLDT 184
++++E+ N N +++K+ +++Q R YK + ++ IE+N Q+D+
Sbjct: 742 RSKLEAYHINCN-KVIKEFSKRQTAR-YKIIEKELAQIEVNLVSQIDS 787
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 348 WLALAEDVRLYIKENILAAI--GTENSRPSSAAQCVAYVAVAELPVGQWNDLIPIL 509
W ++ DV+ I+ N+L E+ + + +A +A +LP G+WN+L L
Sbjct: 73 WSSVDADVQNQIRSNLLDITLKEPESIVRHAFGRVIAALAKLDLPEGKWNELSAFL 128
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 76 LKNSETMHAETTLTLIQILEKTVSPDRNELEAAVRYLDH 192
+KN + H +T L + IL++ D + +RYL H
Sbjct: 549 IKNRQKFHGQT-LVEVGILKRLCEADPADKNNVIRYLSH 586
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1
Query: 179 LTAASNSFRSGETVFSSICISVNVVSACI 93
LTA + S +G ++ S+I ++ N++SA I
Sbjct: 117 LTAYATSAFAGHSLLSTIAVANNIISAAI 145
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -2
Query: 589 ILTNVANSLQSRFLFEFSRLDMNNIFYRIGIRSFHCPT--GSSATATYATHCAAELGRLF 416
++ N + FEF ++ N Y R ++ GS+AT T +T+ + G +
Sbjct: 479 LIDNKTKQTPTNHTFEFGTIEERNSIYLKKGRKYNVRVEYGSAATYTLSTNLSPSTGGRY 538
Query: 415 SV 410
S+
Sbjct: 539 SI 540
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 519 LFMSNLLNSKRKRLWR 566
+F+ N+L KR++LWR
Sbjct: 239 VFVENVLTKKRRKLWR 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,977
Number of Sequences: 5004
Number of extensions: 55099
Number of successful extensions: 159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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