Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30593.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0662 - 10250235-10250433,10250692-10253105 56 2e-08
05_03_0648 + 16563147-16565557,16565655-16565850 55 5e-08
12_02_0820 + 23437811-23440230,23440336-23440534 55 6e-08
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 34 0.094
07_01_0142 + 1054495-1054644,1054767-1055971,1056102-1056180,105... 34 0.12
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 32 0.38
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852... 31 0.67
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 31 1.2
06_01_0030 - 296681-296789,296903-297105,297348-297426,297512-29... 29 3.5
01_05_0681 - 24242485-24242560,24242721-24242785,24242874-242430... 29 4.7
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 28 6.2
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368... 28 6.2
>03_02_0662 - 10250235-10250433,10250692-10253105
Length = 870
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +3
Query: 255 NSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTE--NSRP 428
N +R AG+ LKN L +K+ T K+++ QRW+ + ++ +KE++L +G+ +R
Sbjct: 49 NPPESRRLAGILLKNSLDAKESTRKEEFVQRWMNVDPAIKSQVKESLLITLGSPVFEARR 108
Query: 429 SSAAQCVAYVAVAELPVGQWNDLI 500
SS +Q +A VA E+P W +LI
Sbjct: 109 SS-SQVIAKVAAIEIPHQGWPELI 131
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = +2
Query: 503 NSVENVVHVQSTELKKEATLEAIGYICQDIDAEVL-TERSNQILTAIIHGMRSTEPSNHV 679
N + N+ + K+ATL+ +GY+C++I E L ++ N +LTA++ GM E ++ V
Sbjct: 133 NLLTNMTKPDAPPCLKQATLDCLGYVCEEISPEDLEQDQVNAVLTAVVQGMNHVENNSDV 192
Query: 680 RLAATQ 697
RLAA +
Sbjct: 193 RLAAVK 198
>05_03_0648 + 16563147-16565557,16565655-16565850
Length = 868
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Frame = +2
Query: 548 KEATLEAIGYICQDIDAEVL-TERSNQILTAIIHGMRSTEPSNHVRLAATQ 697
K+ATLEA+GY+C++I E L ++ N +LTA++ GM TE S VRLAA +
Sbjct: 148 KQATLEALGYVCEEISPEHLEQDQVNAVLTAVVQGMNQTELSPEVRLAAVK 198
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +3
Query: 267 ARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTE-NSRPSSAAQ 443
+R AG+ LKN L +KD K+ Q+W++L ++ IKE++L +G+ + +++Q
Sbjct: 53 SRRLAGIILKNSLDAKDSAKKELLIQQWVSLDPSIKQKIKESLLITLGSSVHDARHTSSQ 112
Query: 444 CVAYVAVAELPVGQWNDLI 500
+A VA E+P +W +LI
Sbjct: 113 VIAKVASIEIPRREWQELI 131
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 54.8 bits (126), Expect = 6e-08
Identities = 23/51 (45%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Frame = +2
Query: 548 KEATLEAIGYICQDIDAEVLTE-RSNQILTAIIHGMRSTEPSNHVRLAATQ 697
K+ATLE +GY+C+++ E + + + N+ILTA++ GM ++E ++ VRLAAT+
Sbjct: 148 KQATLETLGYLCEEVSPEAVDQDQVNKILTAVVQGMNASEGNSDVRLAATR 198
Score = 53.6 bits (123), Expect = 1e-07
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +3
Query: 267 ARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTE-NSRPSSAAQ 443
+R AGL LKN L +K+ K + QRWLAL V+ IK +L + + S S+++Q
Sbjct: 55 SRRLAGLILKNALDAKEQHRKNELFQRWLALDVGVKAQIKGFLLQTLSSPVASARSTSSQ 114
Query: 444 CVAYVAVAELPVGQWNDLIPIL 509
+A VA E+P QW +LI L
Sbjct: 115 VIAKVAGIEIPQKQWPELIASL 136
>06_03_1130 -
27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 34.3 bits (75), Expect = 0.094
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = -2
Query: 592 NILTNVANSLQSRFLFEFSRLDMNNIFYRIGIRSFHCPTGSSATATYATHCAAELGRLFS 413
NI+ NV N+L S FL + + ++ G+ +CP TY ++G +
Sbjct: 66 NIIINVFNNLPSPFLLSWQGIQQRRSSWQDGVYGTNCPIPPGGNFTYIMQFKDQIGSYYY 125
Query: 412 VPIAA 398
P A
Sbjct: 126 FPSLA 130
>07_01_0142 +
1054495-1054644,1054767-1055971,1056102-1056180,
1056619-1056822
Length = 545
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = -2
Query: 592 NILTNVANSLQSRFLFEFSRLDMNNIFYRIGIRSFHCPTGSSATATYATHCAAELGRLFS 413
NI+ NV N+L FL ++ + ++ G+ +CP A TY ++G
Sbjct: 70 NIIVNVFNNLDEPFLLTWNGIKQRKNSWQDGVLGTNCPIPPGANYTYKFQAKDQIGTFVY 129
Query: 412 VPIAA 398
P A
Sbjct: 130 FPSVA 134
>01_06_1801 - 39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 32.3 bits (70), Expect = 0.38
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Frame = +3
Query: 267 ARMAAGLQLKNHLTSKDPTLKQQ-----YQQRWLALAEDVRLYIKENILAAIGTENSRPS 431
A++ G Q + LT+KD +++ + +++ A+ D + K+N LAA G++N PS
Sbjct: 1267 AKIVPGNQSADPLTAKDQSVRAKSIEGRHERSEAAMKPDAQQ--KKNALAANGSDNQMPS 1324
Query: 432 SAAQ 443
S+AQ
Sbjct: 1325 SSAQ 1328
>03_02_0441 -
8517501-8517701,8518004-8518139,8519995-8520107,
8520189-8520284,8520376-8520590,8520675-8520797,
8520887-8520917,8521020-8521079,8521951-8522106,
8522185-8522274,8522347-8522562,8522671-8522805,
8522898-8523401,8523485-8523700,8524411-8524456,
8524542-8524678,8525059-8525191,8526084-8526358
Length = 960
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 324 LKQQYQQRWLALAEDVRLYIKENILAAIGTENSR--PSSAAQCVAYVAVAELPVGQWNDL 497
L+++ W L + +K+ ++ +I ++S ++A V+ +A +P G+W +L
Sbjct: 60 LRKKITSHWPKLPPHAKASLKQALIDSITIDHSHLVRRASANVVSIIAKYAVPAGEWPEL 119
Query: 498 IPIL 509
+P +
Sbjct: 120 LPFI 123
>04_04_1693 +
35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 30.7 bits (66), Expect = 1.2
Identities = 27/90 (30%), Positives = 38/90 (42%)
Frame = +3
Query: 267 ARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQC 446
AR AAGL LKN+L + ++ QQ Y+K +L IG N S
Sbjct: 66 ARQAAGLLLKNNLRATFSSMPPASQQ-----------YVKSELLPCIGATNKAIRSTVGT 114
Query: 447 VAYVAVAELPVGQWNDLIPIL*KMLFMSNL 536
V V + V W +L L + L ++L
Sbjct: 115 VISVLFQIVRVAGWIELFQALHQCLDSNDL 144
>06_01_0030 -
296681-296789,296903-297105,297348-297426,297512-297877,
298590-298956,299235-299373,299461-299731,299849-299958,
300567-300704
Length = 593
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/62 (24%), Positives = 24/62 (38%)
Frame = -2
Query: 592 NILTNVANSLQSRFLFEFSRLDMNNIFYRIGIRSFHCPTGSSATATYATHCAAELGRLFS 413
N++ NV NSL L + + ++ G+ CP TY ++G F
Sbjct: 66 NVVVNVLNSLDEPLLITWDGIQQRKNCWQDGVLGTTCPIPPGWNWTYNFQVKDQIGSFFY 125
Query: 412 VP 407
P
Sbjct: 126 FP 127
>01_05_0681 -
24242485-24242560,24242721-24242785,24242874-24243029,
24243073-24243121,24243291-24243366,24243456-24243666,
24244038-24244160,24244245-24244363,24244439-24244532,
24245123-24245233,24245336-24245392
Length = 378
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 25 RFLFFKKQD*VSLLQHKLKNSETMHAETTLTLIQILEKTVSPDRNELE 168
R+ K++ VS Q+ NS+ + T LTL++ +PD +ELE
Sbjct: 164 RYFCLAKREPVSF-QNPSDNSKLLRTPTFLTLVRAGHNRCNPDEDELE 210
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 70 HKLKNSETMHAETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDV 240
H +KN + H + + L T++ + L RYLD T + +K L DV
Sbjct: 456 HYMKNFDVGHVPLRVAKAKQLLGTINNNFGTLAFCRRYLDRLGETKYLMALKNLCDV 512
>06_01_0510 +
3681369-3681645,3682825-3682886,3683016-3683165,
3683776-3683952,3684496-3684711,3684802-3686480,
3686602-3686667,3686753-3686822,3686909-3687547
Length = 1111
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 527 VQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGM 652
+ +T++K L Q+++A V+ R+ +LTAI+H +
Sbjct: 107 IMTTQMKAICNLGVWCISVQELEAVVVDHRATSLLTAIVHAI 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,894,940
Number of Sequences: 37544
Number of extensions: 349006
Number of successful extensions: 1015
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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